Miyakogusa Predicted Gene
- Lj1g3v3961390.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3961390.2 tr|G7JG99|G7JG99_MEDTR Anaphase-promoting complex
subunit OS=Medicago truncatula GN=MTR_4g082150 PE=,93.36,0,E3
UBIQUITIN LIGASE APC2,NULL; CULLIN,NULL; Cullin,Cullin, N-terminal; no
description,NULL; seg,NULL,CUFF.31583.2
(227 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G04660.1 | Symbols: APC2 | anaphase-promoting complex/cycloso... 331 3e-91
AT4G02570.4 | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435 FO... 54 6e-08
AT4G02570.3 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1129... 54 6e-08
AT4G02570.2 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1129... 54 6e-08
AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 | chr4:1129... 54 6e-08
AT5G46210.1 | Symbols: CUL4, ATCUL4 | cullin4 | chr5:18731569-18... 48 7e-06
>AT2G04660.1 | Symbols: APC2 | anaphase-promoting complex/cyclosome
2 | chr2:1624933-1629039 FORWARD LENGTH=865
Length = 865
Score = 331 bits (848), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 156/208 (75%), Positives = 185/208 (88%), Gaps = 4/208 (1%)
Query: 20 LLEELNRDEEIQENVGVDDDFNTDDREAWINASRWQPDPVEADPLKGSRNQRKVDILGMI 79
LLEEL RDEE QENVG DDDF+TDD++AWINASRW+PDPVEADPLKGS +QRKVDILGM+
Sbjct: 484 LLEELMRDEESQENVGFDDDFHTDDKQAWINASRWEPDPVEADPLKGSLSQRKVDILGML 543
Query: 80 VGIIGSKDQLVHEYRTMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSLQKCEIMLNDLI 139
V IIGSK+QLV+EYR MLAEKLLNK+DYDID+EIRT+ELLKIHFGE+S+Q+CEIMLNDLI
Sbjct: 544 VDIIGSKEQLVNEYRVMLAEKLLNKTDYDIDTEIRTVELLKIHFGEASMQRCEIMLNDLI 603
Query: 140 GSKRINSNIKATISQPSQTNVEVEDNAISMDNIAATIISSNFWPPIQVEPLNLPEPVDKL 199
SKR+N+NIK + SQT E+ +N +S+D + +TI+S+NFWPPIQ EPL LP PVDKL
Sbjct: 604 DSKRVNTNIK----KASQTGAELRENELSVDTLTSTILSTNFWPPIQDEPLELPGPVDKL 659
Query: 200 LSDYAKRFNEIKTPRKLQWKKSLGTVKV 227
LSDYA R++EIKTPRKL WKK+LGTVK+
Sbjct: 660 LSDYANRYHEIKTPRKLLWKKNLGTVKL 687
>AT4G02570.4 | Symbols: CUL1 | cullin 1 | chr4:1129315-1133435
FORWARD LENGTH=738
Length = 738
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Query: 79 IVGIIGSKDQLVHEYRTMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSLQKCEIMLNDL 138
++ I KD YR LA +LL + D E L LK G K E M+ DL
Sbjct: 419 LLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 478
Query: 139 IGSKRINSNIKATISQPSQTNVEVEDNAISMDNIAATIISSNFWPPIQVEPLNLPEPVDK 198
++ ++ + + N + ++ T++++ FWP + +NLP + K
Sbjct: 479 TLARENQNSFEDYLGSNPAANPGI--------DLTVTVLTTGFWPSYKSFDINLPSEMIK 530
Query: 199 LLSDYAKRFNEIKTP-RKLQWKKSLGTVKV 227
+ + K F E KT RKL W SLGT +
Sbjct: 531 CVEVF-KGFYETKTKHRKLTWIYSLGTCHI 559
>AT4G02570.3 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 |
chr4:1129315-1133435 FORWARD LENGTH=738
Length = 738
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Query: 79 IVGIIGSKDQLVHEYRTMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSLQKCEIMLNDL 138
++ I KD YR LA +LL + D E L LK G K E M+ DL
Sbjct: 419 LLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 478
Query: 139 IGSKRINSNIKATISQPSQTNVEVEDNAISMDNIAATIISSNFWPPIQVEPLNLPEPVDK 198
++ ++ + + N + ++ T++++ FWP + +NLP + K
Sbjct: 479 TLARENQNSFEDYLGSNPAANPGI--------DLTVTVLTTGFWPSYKSFDINLPSEMIK 530
Query: 199 LLSDYAKRFNEIKTP-RKLQWKKSLGTVKV 227
+ + K F E KT RKL W SLGT +
Sbjct: 531 CVEVF-KGFYETKTKHRKLTWIYSLGTCHI 559
>AT4G02570.2 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 |
chr4:1129315-1133435 FORWARD LENGTH=738
Length = 738
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Query: 79 IVGIIGSKDQLVHEYRTMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSLQKCEIMLNDL 138
++ I KD YR LA +LL + D E L LK G K E M+ DL
Sbjct: 419 LLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 478
Query: 139 IGSKRINSNIKATISQPSQTNVEVEDNAISMDNIAATIISSNFWPPIQVEPLNLPEPVDK 198
++ ++ + + N + ++ T++++ FWP + +NLP + K
Sbjct: 479 TLARENQNSFEDYLGSNPAANPGI--------DLTVTVLTTGFWPSYKSFDINLPSEMIK 530
Query: 199 LLSDYAKRFNEIKTP-RKLQWKKSLGTVKV 227
+ + K F E KT RKL W SLGT +
Sbjct: 531 CVEVF-KGFYETKTKHRKLTWIYSLGTCHI 559
>AT4G02570.1 | Symbols: ATCUL1, CUL1, AXR6 | cullin 1 |
chr4:1129315-1133435 FORWARD LENGTH=738
Length = 738
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 10/150 (6%)
Query: 79 IVGIIGSKDQLVHEYRTMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSLQKCEIMLNDL 138
++ I KD YR LA +LL + D E L LK G K E M+ DL
Sbjct: 419 LLAYISDKDLFAEFYRKKLARRLLFDRSANDDHERSILTKLKQQCGGQFTSKMEGMVTDL 478
Query: 139 IGSKRINSNIKATISQPSQTNVEVEDNAISMDNIAATIISSNFWPPIQVEPLNLPEPVDK 198
++ ++ + + N + ++ T++++ FWP + +NLP + K
Sbjct: 479 TLARENQNSFEDYLGSNPAANPGI--------DLTVTVLTTGFWPSYKSFDINLPSEMIK 530
Query: 199 LLSDYAKRFNEIKTP-RKLQWKKSLGTVKV 227
+ + K F E KT RKL W SLGT +
Sbjct: 531 CVEVF-KGFYETKTKHRKLTWIYSLGTCHI 559
>AT5G46210.1 | Symbols: CUL4, ATCUL4 | cullin4 |
chr5:18731569-18736653 REVERSE LENGTH=792
Length = 792
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 10/147 (6%)
Query: 78 MIVGIIGSKDQLVHEYRTMLAEKLLNKSDYDIDSEIRTLELLKIHFGESSLQKCEIMLND 137
++ I KD Y+ LA++LL ID+E + LK G K E M D
Sbjct: 470 VLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKLEGMFKD 529
Query: 138 LIGSKRINSNIKATISQPSQTNVEVEDNAISMDNIAATIISSNFWPPIQVEPLNLPEPVD 197
+ SK IN + K Q SQ ++ + I M + ++++ +WP + LP ++
Sbjct: 530 IELSKEINESFK----QSSQARTKL-PSGIEM---SVHVLTTGYWPTYPPMDVKLPHELN 581
Query: 198 KLLSDYAKRFNEIK-TPRKLQWKKSLG 223
+ D K F K + R+L W+ SLG
Sbjct: 582 -VYQDIFKEFYLSKYSGRRLMWQNSLG 607