Miyakogusa Predicted Gene

Lj1g3v3959320.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3959320.1 Non Chatacterized Hit- tr|D8S593|D8S593_SELML
Putative uncharacterized protein OS=Selaginella
moelle,38.71,0.0003,seg,NULL,CUFF.31722.1
         (246 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18230.1 | Symbols:  | transcription regulator NOT2/NOT3/NOT5...   140   1e-33
AT5G18230.2 | Symbols:  | transcription regulator NOT2/NOT3/NOT5...   140   1e-33

>AT5G18230.1 | Symbols:  | transcription regulator NOT2/NOT3/NOT5
           family protein | chr5:6021610-6027031 REVERSE LENGTH=843
          Length = 843

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/146 (54%), Positives = 99/146 (67%), Gaps = 11/146 (7%)

Query: 10  SVPSASEITKRNILGADDRLGSSGMVQPLVSPLSNRLILPQVAKANDGMSADSSTVNEAA 69
           S  SA+E+ KRNI+G +        VQPL SPLS +++LP  AK NDG ++DS+  + AA
Sbjct: 407 SATSAAEVAKRNIMGVESN------VQPLTSPLS-KMVLPPTAKGNDGTASDSNPGDVAA 459

Query: 70  AVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRARTEIAPDQREXXXXXXXXXXXXGPST 129
           ++ GR FSPS+V G QWRPGSPFQ+QN+   +R RTEIAPDQRE            G   
Sbjct: 460 SI-GRAFSPSIVSGSQWRPGSPFQSQNET--VRGRTEIAPDQRE-KFLQRLQQVQQGHGN 515

Query: 130 LLNMPSLVGGNHKQFSAQQQNPLLQQ 155
           LL +PSL GGN KQFS+QQQNPLLQQ
Sbjct: 516 LLGIPSLSGGNEKQFSSQQQNPLLQQ 541


>AT5G18230.2 | Symbols:  | transcription regulator NOT2/NOT3/NOT5
           family protein | chr5:6021610-6027031 REVERSE LENGTH=845
          Length = 845

 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/146 (54%), Positives = 99/146 (67%), Gaps = 11/146 (7%)

Query: 10  SVPSASEITKRNILGADDRLGSSGMVQPLVSPLSNRLILPQVAKANDGMSADSSTVNEAA 69
           S  SA+E+ KRNI+G +        VQPL SPLS +++LP  AK NDG ++DS+  + AA
Sbjct: 409 SATSAAEVAKRNIMGVESN------VQPLTSPLS-KMVLPPTAKGNDGTASDSNPGDVAA 461

Query: 70  AVSGRVFSPSVVPGMQWRPGSPFQNQNDAGQLRARTEIAPDQREXXXXXXXXXXXXGPST 129
           ++ GR FSPS+V G QWRPGSPFQ+QN+   +R RTEIAPDQRE            G   
Sbjct: 462 SI-GRAFSPSIVSGSQWRPGSPFQSQNET--VRGRTEIAPDQRE-KFLQRLQQVQQGHGN 517

Query: 130 LLNMPSLVGGNHKQFSAQQQNPLLQQ 155
           LL +PSL GGN KQFS+QQQNPLLQQ
Sbjct: 518 LLGIPSLSGGNEKQFSSQQQNPLLQQ 543