Miyakogusa Predicted Gene

Lj1g3v3958310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3958310.1 Non Chatacterized Hit- tr|I1JD46|I1JD46_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.39505
PE,90.72,0,SUBFAMILY NOT NAMED,NULL; CCR4 NOT-RELATED,NULL;
coiled-coil,NULL; Not3,Not CCR4-Not complex compone,CUFF.31717.1
         (292 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G18230.1 | Symbols:  | transcription regulator NOT2/NOT3/NOT5...   440   e-124
AT5G18230.2 | Symbols:  | transcription regulator NOT2/NOT3/NOT5...   435   e-122

>AT5G18230.1 | Symbols:  | transcription regulator NOT2/NOT3/NOT5
           family protein | chr5:6021610-6027031 REVERSE LENGTH=843
          Length = 843

 Score =  440 bits (1132), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/249 (87%), Positives = 226/249 (90%)

Query: 1   MGASRKLQGEIDRVLKKVQEGVEVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD 60
           MGASRKLQGEIDRVLKKVQEGV+VFDSIWNKVYDTDN NQKEKFEADLKKEIKKLQRYRD
Sbjct: 1   MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNVNQKEKFEADLKKEIKKLQRYRD 60

Query: 61  QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK 120
           QIKTWIQSSEIKDKKVSASYEQ+LVDARKLIE+EMERFKICEKETKTKAFSKEGLGQQPK
Sbjct: 61  QIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQPK 120

Query: 121 TDPKEKAKSESREWLNNVVGELESQIDSFEAELEGLSVKKGKNRPPRLTHLETSITRHKA 180
           TDPKEKAKSE+R+WLNNVV ELESQIDSFEAELEGLSVKKGK RPPRLTHLETSITRHK 
Sbjct: 121 TDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRHKD 180

Query: 181 HIKKCEFILRLLDNDELSPEEVNDVKDFLDDYVERNQXXXXXXXXXXXLYSSLPLDRVET 240
           HI K E ILRLLDNDELSPE+VNDVKDFLDDYVERNQ           LYS+LPLD VE 
Sbjct: 181 HIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEVEG 240

Query: 241 LEDLVMIPP 249
           LEDLV   P
Sbjct: 241 LEDLVTAGP 249


>AT5G18230.2 | Symbols:  | transcription regulator NOT2/NOT3/NOT5
           family protein | chr5:6021610-6027031 REVERSE LENGTH=845
          Length = 845

 Score =  435 bits (1118), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 219/251 (87%), Positives = 226/251 (90%), Gaps = 2/251 (0%)

Query: 1   MGASRKLQGEIDRVLKKVQEGVEVFDSIWNK--VYDTDNANQKEKFEADLKKEIKKLQRY 58
           MGASRKLQGEIDRVLKKVQEGV+VFDSIWNK  VYDTDN NQKEKFEADLKKEIKKLQRY
Sbjct: 1   MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKWNVYDTDNVNQKEKFEADLKKEIKKLQRY 60

Query: 59  RDQIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQ 118
           RDQIKTWIQSSEIKDKKVSASYEQ+LVDARKLIE+EMERFKICEKETKTKAFSKEGLGQQ
Sbjct: 61  RDQIKTWIQSSEIKDKKVSASYEQSLVDARKLIEKEMERFKICEKETKTKAFSKEGLGQQ 120

Query: 119 PKTDPKEKAKSESREWLNNVVGELESQIDSFEAELEGLSVKKGKNRPPRLTHLETSITRH 178
           PKTDPKEKAKSE+R+WLNNVV ELESQIDSFEAELEGLSVKKGK RPPRLTHLETSITRH
Sbjct: 121 PKTDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSITRH 180

Query: 179 KAHIKKCEFILRLLDNDELSPEEVNDVKDFLDDYVERNQXXXXXXXXXXXLYSSLPLDRV 238
           K HI K E ILRLLDNDELSPE+VNDVKDFLDDYVERNQ           LYS+LPLD V
Sbjct: 181 KDHIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDEFSDVDELYSTLPLDEV 240

Query: 239 ETLEDLVMIPP 249
           E LEDLV   P
Sbjct: 241 EGLEDLVTAGP 251