Miyakogusa Predicted Gene

Lj1g3v3948270.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3948270.1 CUFF.31702.1
         (151 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G15530.4 | Symbols:  | RING/U-box superfamily protein | chr2:...    51   3e-07

>AT2G15530.4 | Symbols:  | RING/U-box superfamily protein |
           chr2:6774150-6777899 FORWARD LENGTH=780
          Length = 780

 Score = 51.2 bits (121), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 23/27 (85%), Positives = 24/27 (88%)

Query: 70  PSGISDKIGTIQRRLAWPLRKDDTHKS 96
           P G SDKIGTIQRRLAW LRKDDT+KS
Sbjct: 719 PLGTSDKIGTIQRRLAWLLRKDDTYKS 745