Miyakogusa Predicted Gene

Lj1g3v3948260.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3948260.1 tr|Q4RFZ2|Q4RFZ2_TETNG Chromosome undetermined
SCAF15108, whole genome shotgun sequence
OS=Tetraodon,35.86,2e-18,RRM_1,RNA recognition motif domain;
RNA-binding domain, RBD,NULL; SUBFAMILY NOT NAMED,NULL;
UNCHARAC,CUFF.31696.1
         (445 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09230.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   453   e-128

>AT1G09230.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr1:2979637-2982563 REVERSE LENGTH=442
          Length = 442

 Score =  453 bits (1166), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 239/431 (55%), Positives = 290/431 (67%), Gaps = 26/431 (6%)

Query: 22  ATLIIKHLPEAIPHDTLSRLLSHYNASSVRPCSAARLRNCAFVDFKNDMLASQAQRQLNG 81
            TL+++HLP+ IPHD +SRL S Y AS+VRPCS  +LRN AFVDFKN+  ASQA RQLNG
Sbjct: 28  VTLLVRHLPDGIPHDIVSRLFSQYGASAVRPCSGGKLRNAAFVDFKNEAFASQAHRQLNG 87

Query: 82  LRFLGKVLSAERANPIDNGEKSSGAQQGXXXXXXXXXXXXXXXEDTKSAGLPTPQPIADR 141
           LRFLGKVL  +RAN  ++ +KS   ++                 D+KS  + + +PIA +
Sbjct: 88  LRFLGKVLQVQRANKPNDNKKSRQIEESVTKGNAFSTVSTN--NDSKSGQILSGEPIAPK 145

Query: 142 LGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALXXX 201
           LG+DYPFPPHL+YAYPPPD NIL NI NALIAVP  YTQVLHLMNKMN+P PFR+AL   
Sbjct: 146 LGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMNLPPPFRLALPTP 205

Query: 202 XXXXXXXXXXXXXXXXXXXXTAKPQXXXXXXXXXXXXXXXX-----XXGARRKRARRETI 256
                                A PQ                        + RKRAR   +
Sbjct: 206 PLPK-----------------AGPQQTDLEHQSSSESEMESDEDIGTSKSGRKRARHGFL 248

Query: 257 VGPAIDKDVAHESVGVKPATLVPKEIPMIKKNP-VLKIKIAPKATLNEHKDDDTKQD-LQ 314
           VG  +DKDV HE+VGVKP++L PKEIP I+KN  V++IKI  K T +E+K++   +D   
Sbjct: 249 VGLGMDKDVPHETVGVKPSSLTPKEIPRIRKNKHVMQIKITSKVTQDEYKEESENEDPAD 308

Query: 315 EPENDIPDTNKFLTPDELERGKLPPEEILSLPMFKNYTPGNPAPVLYIKNLAKDVIADDF 374
           EP+    +   F + +ELE+G+LPP++ILSLPMFKNYT GNP+ VLYIKNLAKDV+ DDF
Sbjct: 309 EPKEKDSNLKPFASLEELEKGRLPPQDILSLPMFKNYTAGNPSVVLYIKNLAKDVVIDDF 368

Query: 375 YFIFGSLFGNIEDAKSGLQVKLMQEGRMRGQAFLTFPSTELAHHALNLVNGHVFKGKPMI 434
           Y+IFGS F + E AKS L V+LMQEGRMRGQAFLTFPS E+AH ALNLVNG VFKGKPMI
Sbjct: 369 YYIFGSQFESSEVAKSSLGVRLMQEGRMRGQAFLTFPSVEVAHRALNLVNGFVFKGKPMI 428

Query: 435 IQFGRNPAAAK 445
           IQFGR P AAK
Sbjct: 429 IQFGRTPGAAK 439