Miyakogusa Predicted Gene
- Lj1g3v3948090.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3948090.1 Non Chatacterized Hit- tr|C6T938|C6T938_SOYBN
Putative uncharacterized protein OS=Glycine max PE=2
S,45,3e-18,seg,NULL; no description,Transcription factor, MADS-box;
SRF-like,Transcription factor, MADS-box; MA,CUFF.31558.1
(506 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G55690.1 | Symbols: | MADS-box transcription factor family p... 69 1e-11
AT5G58890.1 | Symbols: AGL82 | AGAMOUS-like 82 | chr5:23780832-2... 64 2e-10
AT3G05860.3 | Symbols: | MADS-box transcription factor family p... 62 6e-10
AT3G05860.2 | Symbols: | MADS-box transcription factor family p... 62 7e-10
AT3G05860.1 | Symbols: | MADS-box transcription factor family p... 62 8e-10
AT2G28700.1 | Symbols: AGL46 | AGAMOUS-like 46 | chr2:12317384-1... 57 3e-08
AT1G65300.1 | Symbols: PHE2, AGL38 | AGAMOUS-like 38 | chr1:2425... 54 3e-07
AT5G26650.1 | Symbols: AGL36 | AGAMOUS-like 36 | chr5:9343785-93... 52 1e-06
AT5G27960.1 | Symbols: AGL90 | AGAMOUS-like 90 | chr5:9991685-99... 50 3e-06
AT5G48670.1 | Symbols: FEM111, AGL80 | AGAMOUS-like 80 | chr5:19... 49 6e-06
AT1G65330.1 | Symbols: PHE1, AGL37 | MADS-box transcription fact... 49 6e-06
>AT5G55690.1 | Symbols: | MADS-box transcription factor family
protein | chr5:22548790-22549623 REVERSE LENGTH=277
Length = 277
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 72/149 (48%), Gaps = 13/149 (8%)
Query: 1 MVRPKLILSRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIYDGDNIGN---AP 57
M R + ++RI+NE+ R + +RK L K SEFS +CG + C+I+Y G+
Sbjct: 1 MGRKMVKMTRITNEKTRITTYKKRKACLYKKASEFSTLCGVDTCVIVYGPSRAGDEMVME 60
Query: 58 PVTWPQDPNVVQQYLIEKYEQAKEKNQTRVKIFDLEEFFETKKHLVESKISNVRKDTFNT 117
P WP+D + V++ ++ KY + T K + ++E E VE K T T
Sbjct: 61 PELWPKDGSKVRE-ILTKYRDTASSSCT--KTYTVQECLEKNNTKVE-------KPTIAT 110
Query: 118 NCPIWHQSLNGLGQEQLKNLIVVLDTKIE 146
P W + L+ L + + ++ KI+
Sbjct: 111 KYPTWDKKLDQCSLNDLYAVFMAVENKIQ 139
>AT5G58890.1 | Symbols: AGL82 | AGAMOUS-like 82 |
chr5:23780832-23781716 FORWARD LENGTH=294
Length = 294
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 35/228 (15%)
Query: 4 PKLI-LSRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIY---DGDNIGNAPPV 59
PK++ L RI+N++ R + +RK L K EFS +CG E CLI+Y ++ + P
Sbjct: 3 PKVVDLQRIANDKTRITTYKKRKASLYKKAQEFSTLCGVETCLIVYGPTKATDVVISEPE 62
Query: 60 TWPQDPNVVQQYLIEKYEQAKE---KNQTRVKIF--DLEEFFETKKHLVESKISNVRKDT 114
WP+D V+ +I KY+ + +T V+ F D+ K + V +K R++
Sbjct: 63 IWPKDETKVRA-IIRKYKDTVSTSCRKETNVETFVNDV-----GKGNEVVTKKRVKRENK 116
Query: 115 FNTNCPIWHQSLNGLGQEQLKNLIVVLDTKI-EACDQSIKMLKEDKLKAAQANF------ 167
+++ W + L+ +EQL + +D+K+ EA + + + +A F
Sbjct: 117 YSS----WEEKLDKCSREQLHGIFCAVDSKLNEAVTRQERSMFRVNHQAMDTPFPQNLMD 172
Query: 168 --LMMQYLSQNQAIHGY--NQLAIASSLFENGEGSSQSQMLQFDPNPM 211
M QY + G+ N + SL +G +Q DPN M
Sbjct: 173 QQFMPQYFHEQPQFQGFPNNFNNMGFSLISPHDGQ-----IQMDPNLM 215
>AT3G05860.3 | Symbols: | MADS-box transcription factor family
protein | chr3:1751406-1752355 REVERSE LENGTH=249
Length = 249
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 1 MVRPKLILSRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIYDGDNIGNAPPVT 60
M R KL LS I+NE R F++RKK L+K I E S +CG EAC +IY N+ P
Sbjct: 1 MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSP---FNSNPEV 57
Query: 61 WPQD---PNVVQQY-LIEKYEQAKE 81
WP + NV++ + ++ K EQ K+
Sbjct: 58 WPSNSEVKNVMENFEMLTKLEQEKK 82
>AT3G05860.2 | Symbols: | MADS-box transcription factor family
protein | chr3:1751655-1752355 REVERSE LENGTH=207
Length = 207
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 1 MVRPKLILSRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIYDGDNIGNAPPVT 60
M R KL LS I+NE R F++RKK L+K I E S +CG EAC +IY N+ P
Sbjct: 1 MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSP---FNSNPEV 57
Query: 61 WPQD---PNVVQQY-LIEKYEQAKE 81
WP + NV++ + ++ K EQ K+
Sbjct: 58 WPSNSEVKNVMENFEMLTKLEQEKK 82
>AT3G05860.1 | Symbols: | MADS-box transcription factor family
protein | chr3:1751406-1752355 REVERSE LENGTH=260
Length = 260
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 1 MVRPKLILSRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIYDGDNIGNAPPVT 60
M R KL LS I+NE R F++RKK L+K I E S +CG EAC +IY N+ P
Sbjct: 1 MTRKKLNLSYITNESMRKATFNKRKKGLVKKIHELSVLCGIEACAVIYSP---FNSNPEV 57
Query: 61 WPQD---PNVVQQY-LIEKYEQAKE 81
WP + NV++ + ++ K EQ K+
Sbjct: 58 WPSNSEVKNVMENFEMLTKLEQEKK 82
>AT2G28700.1 | Symbols: AGL46 | AGAMOUS-like 46 |
chr2:12317384-12318724 REVERSE LENGTH=329
Length = 329
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 15/124 (12%)
Query: 1 MVRPKLILSRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIYDGDNIGNAPPVT 60
M R KL L+ I N+R R +F +R++ LK +++ +C AC ++Y N N+ P
Sbjct: 1 MARKKLNLTYIFNDRMRKRSFKQRREGFLKKLNDLKVLCDVNACAVVY---NPFNSNPDV 57
Query: 61 WPQDPNVVQQYLIEKYEQAKEKNQTRVKIFDLEEFF---------ETKKHLVESKISNVR 111
WP V +I+K+E E Q +VK + EEF ++KK +VE+K + ++
Sbjct: 58 WPSKSEV--NNIIKKFEMLPET-QKKVKSVNHEEFLNLYISKVEKQSKKLIVENKETCLK 114
Query: 112 KDTF 115
+ F
Sbjct: 115 EVMF 118
>AT1G65300.1 | Symbols: PHE2, AGL38 | AGAMOUS-like 38 |
chr1:24254929-24255765 FORWARD LENGTH=278
Length = 278
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 77/164 (46%), Gaps = 13/164 (7%)
Query: 2 VRPKLILSRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIYDGDNIGNAPPVTW 61
++ K+ LS I N R F +RKK + K ++E +CG EAC ++Y N+ P W
Sbjct: 1 MKRKMKLSLIENSVSRKTTFTKRKKGMTKKLTELVTLCGVEACAVVYSP---FNSIPEAW 57
Query: 62 PQDPNVVQQYLIEKYEQAKEKNQTRVKIFDLEEFFETKKHLVESKISNVRKDTFNT---- 117
P V + ++ K+ + ++T+ K+ D E F + + ++ +R + N+
Sbjct: 58 PSREGV--EDVVSKFMELSVLDRTK-KMVDQETFISQRIAKEKEQLQKLRDENHNSQIRE 114
Query: 118 ---NCPIWHQSLNGLGQEQLKNLIVVLDTKIEACDQSIKMLKED 158
C ++ L L++L + +D + + I++L E+
Sbjct: 115 LMFGCLKGETNVYNLDGRDLQDLSLYIDKYLNGLTRRIEILIEN 158
>AT5G26650.1 | Symbols: AGL36 | AGAMOUS-like 36 |
chr5:9343785-9344885 FORWARD LENGTH=366
Length = 366
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 5 KLILSRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIYDGDNIGNAP----PVT 60
K+ LS I+NER R +F +RK + K + E S +CG +AC +IY +P P +
Sbjct: 3 KVKLSLIANERSRKTSFIKRKDGIFKKLHELSTLCGVQACALIY-------SPFIPVPES 55
Query: 61 WP--QDPNVVQQYLIEKYEQAKEKNQTRVKIFDLEEFFETKKHL----VESKISNVRKDT 114
WP + V +E A+ K + + +E + K+ L E++ VR+
Sbjct: 56 WPSREGAKKVASRFLEMPPTARTKKMMDQETYLMERITKAKEQLKNLAAENRELQVRRFM 115
Query: 115 FNTNCPIWHQSLNGLGQEQLKNLIVVLDTKIEACDQSIKMLKED 158
F +C S + L++L ++ ++ + I+ +KE+
Sbjct: 116 F--DCVEGKMSQYHYDAKDLQDLQSCINLYLDQLNGRIESIKEN 157
>AT5G27960.1 | Symbols: AGL90 | AGAMOUS-like 90 |
chr5:9991685-9992770 REVERSE LENGTH=320
Length = 320
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 76/164 (46%), Gaps = 19/164 (11%)
Query: 5 KLILSRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIYDGDNIGNAP----PVT 60
K+ LS I+NER R +F +RK + K + E S +CG +AC +IY +P P +
Sbjct: 3 KVKLSLIANERSRKTSFMKRKNGIFKKLHELSTLCGVQACALIY-------SPFIPVPES 55
Query: 61 WP--QDPNVVQQYLIEKYEQAKEKNQTRVKIFDLEEFFETKKHL----VESKISNVRKDT 114
WP + V +E A+ + + +E + K+ L E++ VR+
Sbjct: 56 WPSREGAKKVASKFLEMPRTARTRKMMDQETHLMERITKAKEQLKNLAAENRELQVRRFM 115
Query: 115 FNTNCPIWHQSLNGLGQEQLKNLIVVLDTKIEACDQSIKMLKED 158
F +C S + L++L+ ++ ++ + I+ +KE+
Sbjct: 116 F--DCVEGKMSQYRYDAKDLQDLLSCMNLYLDQLNGRIESIKEN 157
>AT5G48670.1 | Symbols: FEM111, AGL80 | AGAMOUS-like 80 |
chr5:19738825-19739790 REVERSE LENGTH=321
Length = 321
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 6/114 (5%)
Query: 1 MVRPKLILSRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIYDGDNIGNAPPVT 60
M R K+ L+ ISN+ R F +RKK L+K + E S +CG AC IIY + P
Sbjct: 1 MTRKKVKLAYISNDSSRKATFKKRKKGLMKKVHELSTLCGITACAIIYSPYDTN---PEV 57
Query: 61 WPQDPNVVQQYLIEKYEQAKEKNQTRVKIFDLEEFFETKKHLVESKISNVRKDT 114
WP + V Q ++ ++ E +Q + K+ D E F + + + RKD+
Sbjct: 58 WPSNSGV--QRVVSEFRTLPEMDQHK-KMVDQEGFLKQRIAKATETLRRQRKDS 108
>AT1G65330.1 | Symbols: PHE1, AGL37 | MADS-box transcription factor
family protein | chr1:24266481-24267320 REVERSE
LENGTH=279
Length = 279
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 2 VRPKLILSRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIYDGDNIGNAPPVTW 61
+R K+ LS I N+ R F +RKK +LK +E +CG +AC +I N P W
Sbjct: 1 MRGKMKLSFIENDSVRKTTFTKRKKGMLKKFNELVTLCGVDACAVIRSPYNSIQEP---W 57
Query: 62 PQDPNVVQQYLIEKYEQAKEKNQTRVKIFDLEEFFETKKHLVESKISNVRKDTFNT---- 117
P V + ++ K+ + ++T+ K+ D E F + ++ +R + N+
Sbjct: 58 PSREGV--EEVMSKFMEFSVLDRTK-KMVDQETFLRQRIAKETERLQKLRDENRNSQIRD 114
Query: 118 ---NCPIWHQSLNGLGQEQLKNLIVVLDTKIEACDQSIKMLKED 158
C ++ L L +L V L+ + + +++LKE+
Sbjct: 115 LMFGCLKGEVDVSHLHGRDLLDLNVFLNKYLNGVIRRVEILKEN 158