Miyakogusa Predicted Gene

Lj1g3v3948040.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3948040.1 Non Chatacterized Hit- tr|H0VB73|H0VB73_CAVPO
Uncharacterized protein OS=Cavia porcellus
GN=LOC10072,34.68,1e-18,seg,NULL; tRNA-intron endonuclease catalytic
domain-like,tRNA intron endonuclease, catalytic domain-,CUFF.31554.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G45590.2 | Symbols: ATSEN1, SEN1 | splicing endonuclease 1 | ...   243   8e-65
AT3G45590.1 | Symbols: ATSEN1, SEN1 | splicing endonuclease 1 | ...   243   8e-65
AT5G60230.2 | Symbols: SEN2, ATSEN2 | splicing endonuclease 2 | ...   235   2e-62
AT5G60230.1 | Symbols: SEN2, ATSEN2 | splicing endonuclease 2 | ...   235   2e-62
AT3G45577.1 | Symbols:  | tRNA-intron endonucleases | chr3:16728...    84   7e-17

>AT3G45590.2 | Symbols: ATSEN1, SEN1 | splicing endonuclease 1 |
           chr3:16733062-16733775 FORWARD LENGTH=237
          Length = 237

 Score =  243 bits (620), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 128/242 (52%), Positives = 160/242 (66%), Gaps = 12/242 (4%)

Query: 1   MAPRWXXXXXXXXXXXXXXXXXXPMSKTISHLQSSLVQSDACGFLSDNSVHLAVGAEQID 60
           MAPRW                  P+SKT+S L+SSL Q++A GFLS  +V L+V +E+ +
Sbjct: 1   MAPRWKWKGAEAKALAE------PVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAE 54

Query: 61  LFDKACFGQPVRTVEKDQHLFQLSFEEAFFLCCSLKCLKIIRGDLGPQNDEELWHYMKSK 120
           L D+ CFG+ V   EKD+   QLSFEEAFFL   LKC+KI       +N+ +LW  M S 
Sbjct: 55  LLDRCCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVDLWRSMSSF 114

Query: 121 KEAFPCFYKAYSHLRMKNWVVKSGAQYGVDFVVYRHHPARIHSEYGILVLSDEDKKDLNG 180
           K+ F   YKAYSHLR KNW+V+SG QYGVDFVVYRHHP+ +HSEY +LV S       N 
Sbjct: 115 KQDFAILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGG----ND 170

Query: 181 RLGVWSDAHCITRLLGSVAKILLVMYVNKNGSSDES--PSCLANYSVEERTIARWSPELC 238
           RL VWSD HC  RL GSVAK LLV+YVN+  ++++   P CL +Y+VEE+TI RWSPEL 
Sbjct: 171 RLKVWSDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELS 230

Query: 239 RE 240
           RE
Sbjct: 231 RE 232


>AT3G45590.1 | Symbols: ATSEN1, SEN1 | splicing endonuclease 1 |
           chr3:16733062-16733775 FORWARD LENGTH=237
          Length = 237

 Score =  243 bits (620), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 128/242 (52%), Positives = 160/242 (66%), Gaps = 12/242 (4%)

Query: 1   MAPRWXXXXXXXXXXXXXXXXXXPMSKTISHLQSSLVQSDACGFLSDNSVHLAVGAEQID 60
           MAPRW                  P+SKT+S L+SSL Q++A GFLS  +V L+V +E+ +
Sbjct: 1   MAPRWKWKGAEAKALAE------PVSKTVSELRSSLTQTEALGFLSSCNVLLSVESEEAE 54

Query: 61  LFDKACFGQPVRTVEKDQHLFQLSFEEAFFLCCSLKCLKIIRGDLGPQNDEELWHYMKSK 120
           L D+ CFG+ V   EKD+   QLSFEEAFFL   LKC+KI       +N+ +LW  M S 
Sbjct: 55  LLDRCCFGRLVVGAEKDKRWIQLSFEEAFFLFYKLKCIKICLHGRSLENEVDLWRSMSSF 114

Query: 121 KEAFPCFYKAYSHLRMKNWVVKSGAQYGVDFVVYRHHPARIHSEYGILVLSDEDKKDLNG 180
           K+ F   YKAYSHLR KNW+V+SG QYGVDFVVYRHHP+ +HSEY +LV S       N 
Sbjct: 115 KQDFAILYKAYSHLRSKNWIVRSGLQYGVDFVVYRHHPSLVHSEYAVLVQSIGG----ND 170

Query: 181 RLGVWSDAHCITRLLGSVAKILLVMYVNKNGSSDES--PSCLANYSVEERTIARWSPELC 238
           RL VWSD HC  RL GSVAK LLV+YVN+  ++++   P CL +Y+VEE+TI RWSPEL 
Sbjct: 171 RLKVWSDIHCSVRLTGSVAKSLLVLYVNRKVNTEKMNLPLCLEDYTVEEQTIRRWSPELS 230

Query: 239 RE 240
           RE
Sbjct: 231 RE 232


>AT5G60230.2 | Symbols: SEN2, ATSEN2 | splicing endonuclease 2 |
           chr5:24250185-24250952 REVERSE LENGTH=255
          Length = 255

 Score =  235 bits (599), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/242 (51%), Positives = 157/242 (64%), Gaps = 13/242 (5%)

Query: 1   MAPRWXXXXXXXXXXXXXXXXXXPMSKTISHLQSSLVQSDACGFLSDNSVHLAVGAEQID 60
           MAPRW                  P+SK++S LQ SL ++++ G LS  +V LAV  EQ +
Sbjct: 6   MAPRWKWKGAEAKALAE------PISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAE 59

Query: 61  LFDKACFGQPVRTVEKDQHLFQLSFEEAFFLCCSLKCLKIIRGDLGPQNDEELWHYMKSK 120
           L D+ CFG+ V + EK +   QLSFEEAFFL  +LKC+KI       +N+ + W YMKSK
Sbjct: 60  LLDRCCFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSK 119

Query: 121 KEAFPCFYKAYSHLRMKNWVVKSGAQYGVDFVVYRHHPARIHSEYGILVLSDEDKKDLNG 180
           +  FP F+KAYSHLR KNWV++SG QYGVDFV YRHHP+ +HSEY +LV S +     + 
Sbjct: 120 RPNFPMFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGD-----SD 174

Query: 181 RLGVWSDAHCITRLLGSVAKILLVMYVNKN--GSSDESPSCLANYSVEERTIARWSPELC 238
           RL VWSD HC  RL GSVAK LL +YVN N  G       CL N++VEE+TI+RWSPEL 
Sbjct: 175 RLRVWSDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELS 234

Query: 239 RE 240
           RE
Sbjct: 235 RE 236


>AT5G60230.1 | Symbols: SEN2, ATSEN2 | splicing endonuclease 2 |
           chr5:24250185-24250937 REVERSE LENGTH=250
          Length = 250

 Score =  235 bits (599), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 125/242 (51%), Positives = 157/242 (64%), Gaps = 13/242 (5%)

Query: 1   MAPRWXXXXXXXXXXXXXXXXXXPMSKTISHLQSSLVQSDACGFLSDNSVHLAVGAEQID 60
           MAPRW                  P+SK++S LQ SL ++++ G LS  +V LAV  EQ +
Sbjct: 1   MAPRWKWKGAEAKALAE------PISKSVSELQLSLAETESSGTLSSCNVLLAVEPEQAE 54

Query: 61  LFDKACFGQPVRTVEKDQHLFQLSFEEAFFLCCSLKCLKIIRGDLGPQNDEELWHYMKSK 120
           L D+ CFG+ V + EK +   QLSFEEAFFL  +LKC+KI       +N+ + W YMKSK
Sbjct: 55  LLDRCCFGRLVLSAEKIKKWIQLSFEEAFFLHYNLKCIKISLQGRCLENEVDTWLYMKSK 114

Query: 121 KEAFPCFYKAYSHLRMKNWVVKSGAQYGVDFVVYRHHPARIHSEYGILVLSDEDKKDLNG 180
           +  FP F+KAYSHLR KNWV++SG QYGVDFV YRHHP+ +HSEY +LV S +     + 
Sbjct: 115 RPNFPMFFKAYSHLRSKNWVLRSGLQYGVDFVAYRHHPSLVHSEYSVLVQSGD-----SD 169

Query: 181 RLGVWSDAHCITRLLGSVAKILLVMYVNKN--GSSDESPSCLANYSVEERTIARWSPELC 238
           RL VWSD HC  RL GSVAK LL +YVN N  G       CL N++VEE+TI+RWSPEL 
Sbjct: 170 RLRVWSDIHCAVRLSGSVAKTLLTLYVNGNFKGEDVNLLVCLENFTVEEQTISRWSPELS 229

Query: 239 RE 240
           RE
Sbjct: 230 RE 231


>AT3G45577.1 | Symbols:  | tRNA-intron endonucleases |
           chr3:16728910-16729266 FORWARD LENGTH=118
          Length = 118

 Score = 84.3 bits (207), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/98 (48%), Positives = 59/98 (60%), Gaps = 3/98 (3%)

Query: 41  ACGFLSDNSVHLAVGAEQIDLFDKACFGQPVRTVEKDQHLFQLSFEEAFFLCCSLKCLKI 100
           A GFLS  +V L+   EQ +L D+ CFG+ V   EKD+   QLS+EEAFFL   LKC+KI
Sbjct: 24  ALGFLSSCNVFLS---EQAELLDRYCFGRLVFGAEKDKRWIQLSYEEAFFLFYKLKCIKI 80

Query: 101 IRGDLGPQNDEELWHYMKSKKEAFPCFYKAYSHLRMKN 138
                   N  +LW  ++S K  F   YKAYSHLR KN
Sbjct: 81  SLHGRSLVNGVDLWRSIRSFKPNFTILYKAYSHLRSKN 118