Miyakogusa Predicted Gene
- Lj1g3v3945980.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3945980.1 Non Chatacterized Hit- tr|A9NWW1|A9NWW1_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,45.22,4e-19,seg,NULL; PPR: pentatricopeptide repeat
domain,Pentatricopeptide repeat; PPR,Pentatricopeptide repea,66053_g.1
(124 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G15010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 157 2e-39
AT5G65820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 74 2e-14
AT3G49730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 74 3e-14
AT3G22670.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 66 5e-12
AT3G62540.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 64 2e-11
AT3G62470.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 64 2e-11
AT5G14820.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 64 3e-11
AT1G77360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 62 1e-10
AT1G71060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 57 2e-09
AT1G80550.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 55 8e-09
AT1G20300.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 54 2e-08
AT5G11310.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 51 2e-07
AT1G18900.3 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 4e-07
AT1G18900.2 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 4e-07
AT1G18900.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 50 4e-07
AT3G04130.2 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 5e-07
AT3G04130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 50 5e-07
AT1G02420.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 49 7e-07
AT3G15200.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 48 2e-06
AT1G80880.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 46 5e-06
AT1G52640.1 | Symbols: | Pentatricopeptide repeat (PPR) superfa... 45 9e-06
>AT5G15010.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:4857241-4858959 FORWARD
LENGTH=572
Length = 572
Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/124 (62%), Positives = 88/124 (70%), Gaps = 2/124 (1%)
Query: 1 MHEPGSRPSEIKHKLEXXXXXXXXXXXXXXXXXIRNDWEAAFTFFLWAGKQPGYAHSVRE 60
+ + GS E+++KLE +RNDWE AFTFF+WAGKQ GY SVRE
Sbjct: 104 VKDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVRE 163
Query: 61 YHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLLIMIRKYCAVRDVGRAINTFY 120
YHSMISILGKMRKFDTAW LI+ MR PSLV QTLLIMIRKYCAV DVG+AINTF+
Sbjct: 164 YHSMISILGKMRKFDTAWTLIDEMR--KFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFH 221
Query: 121 AFKR 124
A+KR
Sbjct: 222 AYKR 225
>AT5G65820.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:26339876-26341789 REVERSE
LENGTH=637
Length = 637
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 42 FTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLLI 101
+ FF+WA KQP Y HS+ Y SM+ IL KMR+F W LIE MR P L+ P+ ++
Sbjct: 131 YRFFVWAAKQPRYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMR--KENPQLIEPELFVV 188
Query: 102 MIRKYCAVRDVGRAINTF 119
+++++ + V +AI
Sbjct: 189 LVQRFASADMVKKAIEVL 206
>AT3G49730.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:18445730-18447646 REVERSE
LENGTH=638
Length = 638
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 2/78 (2%)
Query: 42 FTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLLI 101
+ FFLWA KQPGY HS SM+ IL KMR+F W LIE MR T P L+ P+ ++
Sbjct: 115 YRFFLWATKQPGYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMR--KTNPELIEPELFVV 172
Query: 102 MIRKYCAVRDVGRAINTF 119
++R++ + V +A+
Sbjct: 173 LMRRFASANMVKKAVEVL 190
>AT3G22670.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:8017771-8019459 REVERSE
LENGTH=562
Length = 562
Score = 66.2 bits (160), Expect = 5e-12, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 36 NDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVT 95
N W A+ FF+WA Q GY HS Y++M+ +LGK R FD W L+ M LVT
Sbjct: 144 NGWNQAYGFFIWANSQTGYVHSGHTYNAMVDVLGKCRNFDLMWELVNEMNKNEES-KLVT 202
Query: 96 PQTLLIMIRKYCAVRDVGRAINTFYAFKR 124
T+ ++R+ +A++ F ++
Sbjct: 203 LDTMSKVMRRLAKSGKYNKAVDAFLEMEK 231
>AT3G62540.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:23133514-23135313 REVERSE
LENGTH=599
Length = 599
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 55/90 (61%), Gaps = 4/90 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
R+ + AF FF WA ++ G+AH+ R Y+SM+SIL K R+F+T +++E M G L+
Sbjct: 172 RHARKPAFRFFCWAAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKG----LL 227
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTFYAFKR 124
T +T I ++ + A ++ +A+ F K+
Sbjct: 228 TMETFTIAMKAFAAAKERKKAVGIFELMKK 257
>AT3G62470.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr3:23106600-23108399 REVERSE
LENGTH=599
Length = 599
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
R+ + AF FF WA ++ G+AH R Y+SM+SIL K R+F+T +++E M G L+
Sbjct: 172 RHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKG----LL 227
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTFYAFKR 124
T +T I ++ + A ++ +A+ F K+
Sbjct: 228 TMETFTIAMKAFAAAKERKKAVGIFELMKK 257
>AT5G14820.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:4792072-4793868 REVERSE
LENGTH=598
Length = 598
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 4/90 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
R+ + AF FF WA ++ G+AH R Y+SM+SIL K R+F+T +++E M G L+
Sbjct: 171 RHARKPAFRFFCWAAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKG----LL 226
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTFYAFKR 124
T +T I ++ + A ++ +A+ F K+
Sbjct: 227 TMETFTIAMKAFAAAKERKKAVGIFELMKK 256
>AT1G77360.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:29071983-29073536 REVERSE
LENGTH=517
Length = 517
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
RN + FF W+ KQ Y HSVR YH MI K+R++ W+LI MR ++
Sbjct: 111 RNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMR----KKKML 166
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTFYAFKR 124
+T I++RKY + V AI F ++
Sbjct: 167 NVETFCIVMRKYARAQKVDEAIYAFNVMEK 196
>AT1G71060.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:26805651-26807183 REVERSE
LENGTH=510
Length = 510
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLL 100
A + F WA Q G+ H+ Y+++I LGK+++F W+L++ M+ L++ +T
Sbjct: 111 ALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMK----AKKLLSKETFA 166
Query: 101 IMIRKYCAVRDVGRAINTFY 120
++ R+Y R V AI F+
Sbjct: 167 LISRRYARARKVKEAIGAFH 186
>AT1G80550.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:30285358-30286704 REVERSE
LENGTH=448
Length = 448
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 36 NDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVT 95
NDW+ A FF W ++ G+ H+ ++ +I ILGK +F+ +W LI R G S+
Sbjct: 59 NDWQKALEFFNWVERESGFRHTTETFNRVIDILGKYFEFEISWALIN--RMIGNTESVPN 116
Query: 96 PQTLLIMIRKYCAVRDVGRAINTF 119
T I+ ++Y V AI+ +
Sbjct: 117 HVTFRIVFKRYVTAHLVQEAIDAY 140
>AT1G20300.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:7029701-7031314 FORWARD
LENGTH=537
Length = 537
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Query: 41 AFTFFLWAGKQPGYAH-SVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTL 99
+ FF WA + Y H S Y+ MI + GK+R+FD AW+LI++M+ S+ +T
Sbjct: 133 SLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISI---ETF 189
Query: 100 LIMIRKYCAVRDVGRAINTFYAFKR 124
I+IR+Y VR G A + F R
Sbjct: 190 TILIRRY--VR-AGLASEAVHCFNR 211
>AT5G11310.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr5:3606490-3608409 FORWARD
LENGTH=602
Length = 602
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 43/77 (55%)
Query: 43 TFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLLIM 102
+ F WA +PG+ S + S+++ L K R+F+ AW+L+ G +LV+ T +++
Sbjct: 120 SVFKWAEMKPGFTLSPSLFDSVVNSLCKAREFEIAWSLVFDRVRSDEGSNLVSADTFIVL 179
Query: 103 IRKYCAVRDVGRAINTF 119
IR+Y V +AI F
Sbjct: 180 IRRYARAGMVQQAIRAF 196
>AT1G18900.3 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532541 FORWARD
LENGTH=886
Length = 886
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 36 NDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVT 95
ND+ A FF W +QPG+ H Y +M+ LG+ ++F L++ M G P+ VT
Sbjct: 342 NDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVT 401
Query: 96 PQTLLIMIRKYCAVRDVGRAINTF 119
L I Y + A+N F
Sbjct: 402 YNRL---IHSYGRANYLNEAMNVF 422
>AT1G18900.2 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532360 FORWARD
LENGTH=860
Length = 860
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 36 NDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVT 95
ND+ A FF W +QPG+ H Y +M+ LG+ ++F L++ M G P+ VT
Sbjct: 342 NDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVT 401
Query: 96 PQTLLIMIRKYCAVRDVGRAINTF 119
L I Y + A+N F
Sbjct: 402 YNRL---IHSYGRANYLNEAMNVF 422
>AT1G18900.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:6529778-6532360 FORWARD
LENGTH=860
Length = 860
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 36 NDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVT 95
ND+ A FF W +QPG+ H Y +M+ LG+ ++F L++ M G P+ VT
Sbjct: 342 NDYGNALGFFYWLKRQPGFKHDGHTYTTMVGNLGRAKQFGAINKLLDEMVRDGCQPNTVT 401
Query: 96 PQTLLIMIRKYCAVRDVGRAINTF 119
L I Y + A+N F
Sbjct: 402 YNRL---IHSYGRANYLNEAMNVF 422
>AT3G04130.2 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1084136-1085662 FORWARD
LENGTH=508
Length = 508
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
R+DW +A WA G+ HS Y + ILGK +K+D +E MRG LV
Sbjct: 98 RDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGD----KLV 153
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T T+ ++R++ + A+ F
Sbjct: 154 TLNTVAKIMRRFAGAGEWEEAVGIF 178
>AT3G04130.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1084136-1085662 FORWARD
LENGTH=508
Length = 508
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 35 RNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSLV 94
R+DW +A WA G+ HS Y + ILGK +K+D +E MRG LV
Sbjct: 98 RDDWRSALGILKWAESCKGHKHSSDAYDMAVDILGKAKKWDRMKEFVERMRGD----KLV 153
Query: 95 TPQTLLIMIRKYCAVRDVGRAINTF 119
T T+ ++R++ + A+ F
Sbjct: 154 TLNTVAKIMRRFAGAGEWEEAVGIF 178
>AT1G02420.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:493683-495158 FORWARD
LENGTH=491
Length = 491
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 10/88 (11%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWN-LIEVMRGGGTGPSLVTPQTL 99
F+ +A G+ HS +M+ ILG+ RKFD W LIE R SL++P+T+
Sbjct: 91 TLEFYRYASAIRGFYHSSFSLDTMLYILGRNRKFDQIWELLIETKR---KDRSLISPRTM 147
Query: 100 LIM---IRKYCAVRDVGRAINTFYAFKR 124
++ + K C+VR + + +F+ FKR
Sbjct: 148 QVVLGRVAKLCSVR---QTVESFWKFKR 172
>AT3G15200.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:5117489-5119060 REVERSE
LENGTH=523
Length = 523
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
Query: 2 HEPGSRPSEIKHKLEXXXXXXXXXXXXXXXXXIRNDWEAAFTFFLWAGKQPGYAHSVREY 61
H GS P +IK L+ R+DW+ A+ KQ + S Y
Sbjct: 87 HHRGSSPEKIKRILDKCGIDLTEELVLEVVNRNRSDWKPAYILSQLVVKQSVHLSSSMLY 146
Query: 62 HSMISILGKMRKFDTAWNLIEVMRGGGTGPSLVTPQTLLIMIRKYCAVRDVGRAINTF 119
+ ++ +LGKMR+F+ + + M V +T +++ +Y A V A+ F
Sbjct: 147 NEILDVLGKMRRFEEFHQVFDEM---SKRDGFVNEKTYEVLLNRYAAAHKVDEAVGVF 201
>AT1G80880.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:30395194-30396921 REVERSE
LENGTH=540
Length = 540
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 34 IRNDWEAAFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLIEVMRGGGTGPSL 93
+R++W AF F W K+ + MI +LG +KF+ AW LI M S
Sbjct: 133 LRDEWRLAFLAFKWGEKRG--CDDQKSCDLMIWVLGNHQKFNIAWCLIRDM----FNVSK 186
Query: 94 VTPQTLLIMIRKYCAVRDVGRAINTF 119
T + + +M+ +Y A D +AI TF
Sbjct: 187 DTRKAMFLMMDRYAAANDTSQAIRTF 212
>AT1G52640.1 | Symbols: | Pentatricopeptide repeat (PPR)
superfamily protein | chr1:19608857-19610428 REVERSE
LENGTH=523
Length = 523
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 41 AFTFFLWAGKQPGYAHSVREYHSMISILGKMRKFDTAWNLI 81
A FFLWA + P +AHS+ YH ++ ILG ++F W+ +
Sbjct: 85 AHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFL 125