Miyakogusa Predicted Gene
- Lj1g3v3944820.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3944820.1 Non Chatacterized Hit- tr|J3M5T7|J3M5T7_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB05G1,40.4,0.000000000002,zf-C3Hc3H,Potential DNA-binding domain;
seg,NULL,CUFF.31536.1
(232 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G31600.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 188 2e-48
AT3G53860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 181 5e-46
AT1G05860.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 172 2e-43
AT2G31600.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 126 1e-29
>AT2G31600.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G53860.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:13448541-13450083 REVERSE LENGTH=301
Length = 301
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/221 (42%), Positives = 136/221 (61%), Gaps = 15/221 (6%)
Query: 14 IDGADQDAALANSTVLSRSEVIARRLRRVKQLARCYRGHYWALMEDLKSKYRDYYWTYGK 73
I + +D LA S+ ++RSE++ RR +KQLA+CYR +YWALMED+K+++RDY+W YG
Sbjct: 63 ITMSQEDEILARSSHITRSELLKRRSHNLKQLAKCYRDNYWALMEDVKAQHRDYWWKYGI 122
Query: 74 SPFKDDDHG-------GANGTVVSE-EKVNGTADHASAAAGVDFVRCASG-------GCK 118
S FKD+++ G G + + V G+ D+ + GV + A+ GCK
Sbjct: 123 SQFKDENNQSNKRRRLGQEGDIGDGGDAVEGSGDNVTNNDGVKSDQYANSNCGSCMYGCK 182
Query: 119 TKAMAMSRFCHAHIVFDTKQKLYVGCTTVAKNLPTGPSFCNKPVLTSVVPRSCHQHYQLG 178
KAMA++++C HI+ D+KQKLY GCT V K P GP C KP L S VP C+ H+Q
Sbjct: 183 AKAMALTKYCQLHILKDSKQKLYTGCTNVIKRAPAGPLLCGKPTLASTVPALCNIHFQKA 242
Query: 179 EKCLTRAIRRAGYNIPINRKPSLPLHVVIPEFVREIQNKRK 219
+K + +A++ AG+N+ KP LHV++ FV IQ KRK
Sbjct: 243 QKHVAKALKDAGHNVSSTSKPPPKLHVIVAAFVHHIQAKRK 283
>AT3G53860.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT2G31600.1); Has 70 Blast hits to 70
proteins in 17 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other
Eukaryotes - 4 (source: NCBI BLink). |
chr3:19949850-19951270 REVERSE LENGTH=281
Length = 281
Score = 181 bits (458), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 90/205 (43%), Positives = 126/205 (61%), Gaps = 9/205 (4%)
Query: 19 QDAALANSTVLSRSEVIARRLRRVKQLARCYRGHYWALMEDLKSKYRDYYWTYGKSPFKD 78
+D LA+S+ L+R E++ RR +KQLA+CY+ HYWALMEDLK+++RDY+ YG S FKD
Sbjct: 64 EDEILASSSHLTRPELLRRRADNLKQLAKCYKNHYWALMEDLKAQHRDYWCKYGVSQFKD 123
Query: 79 DDHGGANGTVVSEEKVNGTADHASAAAGVDFVRCASG----GCKTKAMAMSRFCHAHIVF 134
+ + + E G+ D + G + SG GCK KAMA++++C HI+
Sbjct: 124 EQNQSNKRRRLDPE---GSGDKGND--GDQYANSNSGFCMYGCKAKAMALTKYCQLHILK 178
Query: 135 DTKQKLYVGCTTVAKNLPTGPSFCNKPVLTSVVPRSCHQHYQLGEKCLTRAIRRAGYNIP 194
D+KQKLY GCT V P GP C KP L S VP C+ HYQ +K + +A++ AG+N+
Sbjct: 179 DSKQKLYTGCTNVINRSPAGPLLCGKPTLASTVPVLCNVHYQKAQKNVAKALKDAGHNVS 238
Query: 195 INRKPSLPLHVVIPEFVREIQNKRK 219
KP LHV++ FV IQ +RK
Sbjct: 239 STSKPPPKLHVIVAAFVHHIQAQRK 263
>AT1G05860.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT2G31600.1); Has 101 Blast
hits to 100 proteins in 32 species: Archae - 0; Bacteria
- 0; Metazoa - 28; Fungi - 2; Plants - 66; Viruses - 0;
Other Eukaryotes - 5 (source: NCBI BLink). |
chr1:1769061-1770349 FORWARD LENGTH=280
Length = 280
Score = 172 bits (435), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/214 (42%), Positives = 125/214 (58%), Gaps = 10/214 (4%)
Query: 14 IDGADQDAALANSTVLSRSEVIARRLRRVKQLARCYRGHYWALMEDLKSKYRDYYWTYGK 73
I A +D L NS L+R E++ RR +KQL+RCYR HYWALMEDLK+++R Y W YG
Sbjct: 51 ISMAVEDQILGNSNHLTRPELLRRRSHNLKQLSRCYRDHYWALMEDLKAQHRYYSWNYGV 110
Query: 74 SPFKDDDH--------GGANGTVVSEEKVNGTADHASAAAGVDFVRCASGGCKTKAMAMS 125
SPFKD+++ G G + N ++ AG + V C SG CK+KAMA++
Sbjct: 111 SPFKDENYHQNKRRKVEGQTGDEIEGSGDNDNNNNDGVKAG-NCVACGSG-CKSKAMALT 168
Query: 126 RFCHAHIVFDTKQKLYVGCTTVAKNLPTGPSFCNKPVLTSVVPRSCHQHYQLGEKCLTRA 185
+C HI+ D KQKLY CT V K + C KP L S VP C+ H+Q +K + RA
Sbjct: 169 NYCQLHILMDKKQKLYTSCTYVNKRAQSKAITCPKPTLASTVPALCNVHFQKAQKDVARA 228
Query: 186 IRRAGYNIPINRKPSLPLHVVIPEFVREIQNKRK 219
++ AG+N+ +P LH ++ FV IQ KRK
Sbjct: 229 LKDAGHNVSSASRPPPKLHDIVAAFVHHIQAKRK 262
>AT2G31600.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT3G53860.1); Has 35333 Blast hits to
34131 proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr2:13449205-13450083 REVERSE LENGTH=216
Length = 216
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/151 (42%), Positives = 95/151 (62%), Gaps = 15/151 (9%)
Query: 14 IDGADQDAALANSTVLSRSEVIARRLRRVKQLARCYRGHYWALMEDLKSKYRDYYWTYGK 73
I + +D LA S+ ++RSE++ RR +KQLA+CYR +YWALMED+K+++RDY+W YG
Sbjct: 63 ITMSQEDEILARSSHITRSELLKRRSHNLKQLAKCYRDNYWALMEDVKAQHRDYWWKYGI 122
Query: 74 SPFKDDDHG-------GANGTVVS-EEKVNGTADHASAAAGVDFVRCASG-------GCK 118
S FKD+++ G G + + V G+ D+ + GV + A+ GCK
Sbjct: 123 SQFKDENNQSNKRRRLGQEGDIGDGGDAVEGSGDNVTNNDGVKSDQYANSNCGSCMYGCK 182
Query: 119 TKAMAMSRFCHAHIVFDTKQKLYVGCTTVAK 149
KAMA++++C HI+ D+KQKLY GCT V K
Sbjct: 183 AKAMALTKYCQLHILKDSKQKLYTGCTNVIK 213