Miyakogusa Predicted Gene

Lj1g3v3930430.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3930430.1 Non Chatacterized Hit- tr|I1ML78|I1ML78_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.34455
PE,83.84,0,HELICASE_ATP_BIND_1,Helicase, superfamily 1/2, ATP-binding
domain; HELICASE_CTER,Helicase, C-termina,CUFF.31512.1
         (820 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02060.1 | Symbols:  | DEAD/DEAH box helicase, putative | chr...  1288   0.0  
AT3G02060.2 | Symbols:  | DEAD/DEAH box helicase, putative | chr...  1288   0.0  
AT2G01440.1 | Symbols:  | DEAD/DEAH box RNA helicase family prot...   224   1e-58
AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079 FO...    52   2e-06
AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60...    52   2e-06
AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c...    50   5e-06
AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c...    50   5e-06
AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) | c...    50   5e-06

>AT3G02060.1 | Symbols:  | DEAD/DEAH box helicase, putative |
           chr3:354409-358319 FORWARD LENGTH=823
          Length = 823

 Score = 1288 bits (3334), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/754 (81%), Positives = 687/754 (91%), Gaps = 4/754 (0%)

Query: 71  DNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGK---- 126
           ++D ISLLNERIRRD GKRE +R  MD +EAEKYI +VKEQQ+RGLQKLKG R G     
Sbjct: 70  ESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMVKEQQERGLQKLKGIRQGTKAAG 129

Query: 127 DGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPV 186
           DG FSYKVDPY+L +GDYVVHKKVGIG F+GIK DVPK+S+EP EYVFIEYADGMAKLP+
Sbjct: 130 DGAFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPL 189

Query: 187 KQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQR 246
           KQ+S++LYRY LPNE K+P+ LS+L+DTSVWE+RKTKGKVAIQKMVVDLMELYLHRL+Q+
Sbjct: 190 KQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQK 249

Query: 247 RPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
           R PYPK+P MA+F AQFPY  TPDQKQAF+DVEKDLTERETPMDRLICGDVGFGKTEVAL
Sbjct: 250 RYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVAL 309

Query: 307 RAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
           RAI CVVS  KQAMVLAPTIVLAKQH+DVISERF++YP IKVGLLSRFQTKAEKEE+LE 
Sbjct: 310 RAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEM 369

Query: 367 IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
           IK+G L+IIVGTHSLLG+RVVYSNLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATP
Sbjct: 370 IKTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATP 429

Query: 427 IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
           IPRTLYLALTGFRDASLI+TPPPER+PIKTHLSSF KEKVI AIK ELDRGGQVFYVLPR
Sbjct: 430 IPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPR 489

Query: 487 IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
           IKGLEEVM+FLEE+FPD++IA+ HGKQYSKQLE+TME+FA G+IKILI TNIVESGLDIQ
Sbjct: 490 IKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQ 549

Query: 547 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
           NANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK+LLSDQALERLSALEECRE
Sbjct: 550 NANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRE 609

Query: 607 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
           LGQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEE R+ +VPY  
Sbjct: 610 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDL 669

Query: 667 VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
           V++DININP LPSEY+N+LENPMEII+EAE+ AEKD WSLMQFTENLRRQYGKEP  ME+
Sbjct: 670 VKIDININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEI 729

Query: 727 LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
           +LKKLY+RRMAAD+G+NRIY+SGK V MK N++KKVFK++TDSMT D+YR+SL+ EGDQI
Sbjct: 730 ILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQI 789

Query: 787 KAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
            A            NW+FQC++ELHASLPALIKY
Sbjct: 790 MAELLLELPREQLLNWMFQCLSELHASLPALIKY 823


>AT3G02060.2 | Symbols:  | DEAD/DEAH box helicase, putative |
           chr3:354412-358319 FORWARD LENGTH=822
          Length = 822

 Score = 1288 bits (3332), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/754 (81%), Positives = 687/754 (91%), Gaps = 4/754 (0%)

Query: 71  DNDPISLLNERIRRDHGKREVSRTVMDKKEAEKYIQLVKEQQQRGLQKLKGERVGK---- 126
           ++D ISLLNERIRRD GKRE +R  MD +EAEKYI +VKEQQ+RGLQKLKG R G     
Sbjct: 69  ESDSISLLNERIRRDLGKRETARPAMDSEEAEKYIHMVKEQQERGLQKLKGIRQGTKAAG 128

Query: 127 DGNFSYKVDPYTLRNGDYVVHKKVGIGMFIGIKMDVPKNSAEPTEYVFIEYADGMAKLPV 186
           DG FSYKVDPY+L +GDYVVHKKVGIG F+GIK DVPK+S+EP EYVFIEYADGMAKLP+
Sbjct: 129 DGAFSYKVDPYSLLSGDYVVHKKVGIGRFVGIKFDVPKDSSEPLEYVFIEYADGMAKLPL 188

Query: 187 KQSSKMLYRYCLPNENKKPKALSKLNDTSVWEKRKTKGKVAIQKMVVDLMELYLHRLKQR 246
           KQ+S++LYRY LPNE K+P+ LS+L+DTSVWE+RKTKGKVAIQKMVVDLMELYLHRL+Q+
Sbjct: 189 KQASRLLYRYNLPNETKRPRTLSRLSDTSVWERRKTKGKVAIQKMVVDLMELYLHRLRQK 248

Query: 247 RPPYPKSPAMAEFTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVAL 306
           R PYPK+P MA+F AQFPY  TPDQKQAF+DVEKDLTERETPMDRLICGDVGFGKTEVAL
Sbjct: 249 RYPYPKNPIMADFAAQFPYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVAL 308

Query: 307 RAIRCVVSAKKQAMVLAPTIVLAKQHFDVISERFAVYPDIKVGLLSRFQTKAEKEEHLES 366
           RAI CVVS  KQAMVLAPTIVLAKQH+DVISERF++YP IKVGLLSRFQTKAEKEE+LE 
Sbjct: 309 RAIFCVVSTGKQAMVLAPTIVLAKQHYDVISERFSLYPHIKVGLLSRFQTKAEKEEYLEM 368

Query: 367 IKSGELDIIVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIATFKTSVDVLTLSATP 426
           IK+G L+IIVGTHSLLG+RVVYSNLGLLVVDEEQRFGVKQKEKIA+FKTSVDVLTLSATP
Sbjct: 369 IKTGHLNIIVGTHSLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIASFKTSVDVLTLSATP 428

Query: 427 IPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSKEKVISAIKYELDRGGQVFYVLPR 486
           IPRTLYLALTGFRDASLI+TPPPER+PIKTHLSSF KEKVI AIK ELDRGGQVFYVLPR
Sbjct: 429 IPRTLYLALTGFRDASLISTPPPERIPIKTHLSSFRKEKVIEAIKNELDRGGQVFYVLPR 488

Query: 487 IKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLEDTMEKFALGEIKILISTNIVESGLDIQ 546
           IKGLEEVM+FLEE+FPD++IA+ HGKQYSKQLE+TME+FA G+IKILI TNIVESGLDIQ
Sbjct: 489 IKGLEEVMDFLEEAFPDIDIAMAHGKQYSKQLEETMERFAQGKIKILICTNIVESGLDIQ 548

Query: 547 NANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALERLSALEECRE 606
           NANTII+QDVQQFGLAQLYQLRGRVGRADKEA+AYL YPDK+LLSDQALERLSALEECRE
Sbjct: 549 NANTIIIQDVQQFGLAQLYQLRGRVGRADKEAHAYLFYPDKSLLSDQALERLSALEECRE 608

Query: 607 LGQGFQLAERDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEEHRVVAVPYHS 666
           LGQGFQLAE+DMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEE R+ +VPY  
Sbjct: 609 LGQGFQLAEKDMGIRGFGTIFGEQQTGDVGNVGIDLFFEMLFESLSKVEELRIFSVPYDL 668

Query: 667 VQVDININPHLPSEYINHLENPMEIINEAERVAEKDTWSLMQFTENLRRQYGKEPRPMEV 726
           V++DININP LPSEY+N+LENPMEII+EAE+ AEKD WSLMQFTENLRRQYGKEP  ME+
Sbjct: 669 VKIDININPRLPSEYVNYLENPMEIIHEAEKAAEKDMWSLMQFTENLRRQYGKEPYSMEI 728

Query: 727 LLKKLYLRRMAADIGINRIYSSGKTVFMKANITKKVFKMMTDSMTSDIYRNSLVLEGDQI 786
           +LKKLY+RRMAAD+G+NRIY+SGK V MK N++KKVFK++TDSMT D+YR+SL+ EGDQI
Sbjct: 729 ILKKLYVRRMAADLGVNRIYASGKMVVMKTNMSKKVFKLITDSMTCDVYRSSLIYEGDQI 788

Query: 787 KAXXXXXXXXXXXXNWIFQCVAELHASLPALIKY 820
            A            NW+FQC++ELHASLPALIKY
Sbjct: 789 MAELLLELPREQLLNWMFQCLSELHASLPALIKY 822


>AT2G01440.1 | Symbols:  | DEAD/DEAH box RNA helicase family protein
            | chr2:193950-199056 REVERSE LENGTH=973
          Length = 973

 Score =  224 bits (572), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 143/414 (34%), Positives = 227/414 (54%), Gaps = 48/414 (11%)

Query: 259 FTAQFPYEPTPDQKQAFIDVEKDLTERETPMDRLICGDVGFGKTEVALRAIRCVVSAKKQ 318
           F    PY  TP Q  A  ++  DL +R  PM+RL+ GDVG GKT VA  A   V+ +  Q
Sbjct: 514 FLKALPYSLTPSQLSAVSEIIWDL-KRPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQ 572

Query: 319 AMVLAPTIVLAKQHF----DVISERFAVYPDIKVGLLSRFQTKAEKEEHLESIKSGELDI 374
           A  +APT +LA QH+    D++     V     +GLL+      +     + ++SG +  
Sbjct: 573 AAFMAPTELLAIQHYEQCRDLLENMEGVSSKPTIGLLTGSTPAKQSRMIRQDLQSGAISF 632

Query: 375 IVGTHSLLGNRVVYSNLGLLVVDEEQRFGVKQKEKIAT--FKTSV--------------- 417
           I+GTHSL+  ++ YS L + VVDE+QRFGV Q+ K  +  + TS+               
Sbjct: 633 IIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSMISKSGSSDSDDTSKA 692

Query: 418 ------DVLTLSATPIPRTLYLALTGFRDASLITTPPPERVPIKTHLSSFSK---EKVIS 468
                  VL +SATPIPR+L LAL G    + IT  P  R+P++TH+   ++   ++V S
Sbjct: 693 DLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVETHIFEGNETGIKEVYS 752

Query: 469 AIKYELDRGGQVFYV---------LPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQLE 519
            +  +L  GG+V+ V         LP+++     +E + + FP     + HG+  S   E
Sbjct: 753 MMLEDLKSGGRVYVVYPVIDQSEQLPQLRAASAELEIVTKKFPKYNCGLLHGRMKSDDKE 812

Query: 520 DTMEKFALGEIKILISTNIVESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAY 579
           + + KF  GE +IL+ST ++E G+D+ +A+ ++V + ++FG+AQL+QLRGRVGR  +++ 
Sbjct: 813 EALNKFRSGETQILLSTQVIEIGVDVPDASMMVVMNAERFGIAQLHQLRGRVGRGTRKSK 872

Query: 580 AYLLYPDKNLLSDQALERLSALEECRELGQGFQLAERDMGIRGFGTIFGEQQTG 633
             L+    N     +L+RL+ L +  +   GF LA  D+ +RG G + G++Q+G
Sbjct: 873 CLLVGSSTN-----SLKRLNMLGKSSD---GFYLANIDLLLRGPGDLLGKKQSG 918


>AT1G01040.2 | Symbols: DCL1 | dicer-like 1 | chr1:23519-31079
           FORWARD LENGTH=1910
          Length = 1910

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 12/118 (10%)

Query: 483 VLPRIKGLEEVMEFLEESFPDVEIAIGHGKQY---SKQLEDTMEKFALGEIKILISTNIV 539
           VLP++       E    SF      IGH       S Q++DT+ KF  G + +L++T++ 
Sbjct: 679 VLPKV-----FAELPSLSFIRCASMIGHNNSQEMKSSQMQDTISKFRDGHVTLLVATSVA 733

Query: 540 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALER 597
           E GLDI+  N ++  D+ +  LA + Q R   GRA K    Y+L  ++  +S  A  R
Sbjct: 734 EEGLDIRQCNVVMRFDLAKTVLAYI-QSR---GRARKPGSDYILMVERGNVSHAAFLR 787


>AT1G01040.1 | Symbols: DCL1, CAF, SUS1, SIN1, ASU1, EMB76, EMB60,
           ATDCL1 | dicer-like 1 | chr1:23519-31079 FORWARD
           LENGTH=1909
          Length = 1909

 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 12/118 (10%)

Query: 483 VLPRIKGLEEVMEFLEESFPDVEIAIGHGKQY---SKQLEDTMEKFALGEIKILISTNIV 539
           VLP++       E    SF      IGH       S Q++DT+ KF  G + +L++T++ 
Sbjct: 679 VLPKV-----FAELPSLSFIRCASMIGHNNSQEMKSSQMQDTISKFRDGHVTLLVATSVA 733

Query: 540 ESGLDIQNANTIIVQDVQQFGLAQLYQLRGRVGRADKEAYAYLLYPDKNLLSDQALER 597
           E GLDI+  N ++  D+ +  LA + Q R   GRA K    Y+L  ++  +S  A  R
Sbjct: 734 EEGLDIRQCNVVMRFDLAKTVLAYI-QSR---GRARKPGSDYILMVERGNVSHAAFLR 787


>AT5G26742.2 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
           chr5:9285540-9288871 REVERSE LENGTH=748
          Length = 748

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 12/143 (8%)

Query: 459 SSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQL 518
           +S SK  ++S +     +GG+        +  +EV   L  S     +   HG     Q 
Sbjct: 333 TSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEAL---HGDISQHQR 389

Query: 519 EDTMEKFALGEIKILISTNIVESGLDIQNANTII----VQDVQQFGLAQLYQLRGRVGRA 574
           E T+  F  G+  +L++T++   GLDI N + +I      D + F         GR GRA
Sbjct: 390 ERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETF-----VHRSGRTGRA 444

Query: 575 DKEAYAYLLYPDKNLLSDQALER 597
            KE  A L++      + ++LER
Sbjct: 445 GKEGSAILMHTSSQKRTVRSLER 467


>AT5G26742.1 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
           chr5:9285540-9288871 REVERSE LENGTH=747
          Length = 747

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 12/143 (8%)

Query: 459 SSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQL 518
           +S SK  ++S +     +GG+        +  +EV   L  S     +   HG     Q 
Sbjct: 333 TSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEAL---HGDISQHQR 389

Query: 519 EDTMEKFALGEIKILISTNIVESGLDIQNANTII----VQDVQQFGLAQLYQLRGRVGRA 574
           E T+  F  G+  +L++T++   GLDI N + +I      D + F         GR GRA
Sbjct: 390 ERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETF-----VHRSGRTGRA 444

Query: 575 DKEAYAYLLYPDKNLLSDQALER 597
            KE  A L++      + ++LER
Sbjct: 445 GKEGSAILMHTSSQKRTVRSLER 467


>AT5G26742.3 | Symbols: emb1138 | DEAD box RNA helicase (RH3) |
           chr5:9285540-9288618 REVERSE LENGTH=655
          Length = 655

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 63/143 (44%), Gaps = 12/143 (8%)

Query: 459 SSFSKEKVISAIKYELDRGGQVFYVLPRIKGLEEVMEFLEESFPDVEIAIGHGKQYSKQL 518
           +S SK  ++S +     +GG+        +  +EV   L  S     +   HG     Q 
Sbjct: 240 TSTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALSNSIATEAL---HGDISQHQR 296

Query: 519 EDTMEKFALGEIKILISTNIVESGLDIQNANTII----VQDVQQFGLAQLYQLRGRVGRA 574
           E T+  F  G+  +L++T++   GLDI N + +I      D + F         GR GRA
Sbjct: 297 ERTLNAFRQGKFTVLVATDVASRGLDIPNVDLVIHYELPNDPETF-----VHRSGRTGRA 351

Query: 575 DKEAYAYLLYPDKNLLSDQALER 597
            KE  A L++      + ++LER
Sbjct: 352 GKEGSAILMHTSSQKRTVRSLER 374