Miyakogusa Predicted Gene
- Lj1g3v3918090.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3918090.1 NODE_39948_length_682_cov_133.857773.path4.1
(164 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09620.1 | Symbols: | ATP binding;leucine-tRNA ligases;amino... 295 9e-81
>AT1G09620.1 | Symbols: | ATP binding;leucine-tRNA
ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP
binding;aminoacyl-tRNA ligases | chr1:3113077-3116455
REVERSE LENGTH=1091
Length = 1091
Score = 295 bits (755), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 135/164 (82%), Positives = 152/164 (92%)
Query: 1 MKSVGIFDDEISKFQDPHKWLSYFPPLAVEDLKAFGLGCDWRRSFVTTDMNPYFDSFVRW 60
M+S G+ D EI+ F++P +WL YFPPLAVEDL+A+GLGCDWRRSFVTTD+NP+FD+FVRW
Sbjct: 165 MRSFGLTDSEIANFREPSEWLYYFPPLAVEDLRAYGLGCDWRRSFVTTDVNPFFDAFVRW 224
Query: 61 QVRKLKSMGKIVKDVRHTIFSPLDGQPCADHDRATGEGVQPQEYTIIKMEVVAPFPPKFE 120
Q+RKLKSMGKIVKD R+TIFSPLDGQPCADHDRATGEGVQPQEYT+IKMEVV PFP K
Sbjct: 225 QMRKLKSMGKIVKDRRYTIFSPLDGQPCADHDRATGEGVQPQEYTLIKMEVVKPFPLKLG 284
Query: 121 VLEGKKVFLAAATLRPETMYGQTNAWVLPDGKYGAFEISDTEVF 164
LEGK+VFLAAATLRPETMYGQTNAWVLPDGKYGA+EIS+TEVF
Sbjct: 285 PLEGKRVFLAAATLRPETMYGQTNAWVLPDGKYGAYEISETEVF 328