Miyakogusa Predicted Gene
- Lj1g3v3918060.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3918060.1 Non Chatacterized Hit- tr|B9RGV5|B9RGV5_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,42.31,0.000000005,coiled-coil,NULL; HisI-like,NULL; all-alpha NTP
pyrophosphatases,NULL; PRA-CH,Phosphoribosyl-AMP cyc,CUFF.31526.1
(283 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31860.1 | Symbols: AT-IE, HISN2 | histidine biosynthesis bif... 386 e-108
>AT1G31860.1 | Symbols: AT-IE, HISN2 | histidine biosynthesis
bifunctional protein (HISIE) | chr1:11434250-11436530
REVERSE LENGTH=281
Length = 281
Score = 386 bits (992), Expect = e-108, Method: Compositional matrix adjust.
Identities = 196/283 (69%), Positives = 224/283 (79%), Gaps = 11/283 (3%)
Query: 1 MAVSYVHMLQS-ARG--FHKCNLSFSSHEYPRRSYKTHHLVFASMHTSN----PKVDSFL 53
MAVSY + QS AR F SF + RS ++VFA N KVD+ L
Sbjct: 1 MAVSYNALAQSLARSSCFIPKPYSFRDTKLRSRS----NVVFACNDNKNIALQAKVDNLL 56
Query: 54 DSLKWDDKGLAVAIAQNVDTGAILMQGFANREAVVTTISSRKATFYSRSRSALWTKGETS 113
D +KWDDKGLAVAIAQNVDTGA+LMQGF NREA+ TTISSRKATF+SRSRS LWTKGETS
Sbjct: 57 DRIKWDDKGLAVAIAQNVDTGAVLMQGFVNREALSTTISSRKATFFSRSRSTLWTKGETS 116
Query: 114 NNFINVHDVFLDCDRDSIIYLGKPDGPTCHTGAETCYYTSVFDLLKEQEADGNKLALTSL 173
NNFIN+ DV++DCDRDSIIYLG PDGPTCHTG ETCYYTSVFD L EA GNKLALT+L
Sbjct: 117 NNFINILDVYVDCDRDSIIYLGTPDGPTCHTGEETCYYTSVFDQLNNDEASGNKLALTTL 176
Query: 174 YDLESTISQRKAELAEVENGKPSWTKRLLLNDELLCSKIREEANELCQTLESNEDKSRTA 233
Y LES IS+RK E + GKPSWT+RLL +D LLCSKIREEA+ELC+TLE NE+ SRT
Sbjct: 177 YSLESIISKRKEESTVPQEGKPSWTRRLLTDDALLCSKIREEADELCRTLEDNEEVSRTP 236
Query: 234 SEMADVLYHAMVLMARKDVKMEDVLQVLRQRFSQSGIEEKRSR 276
SEMADVLYHAMVL++++ VKMEDVL+VLR+RFSQSGIEEK++R
Sbjct: 237 SEMADVLYHAMVLLSKRGVKMEDVLEVLRKRFSQSGIEEKQNR 279