Miyakogusa Predicted Gene
- Lj1g3v3904640.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3904640.1 Non Chatacterized Hit- tr|D7M5Y5|D7M5Y5_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,30.2,1e-16,seg,NULL,CUFF.31474.1
(224 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G13950.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 94 1e-19
AT5G13950.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 94 1e-19
AT5G13950.3 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 94 1e-19
>AT5G13950.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins
in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56;
Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr5:4496196-4500206 REVERSE
LENGTH=939
Length = 939
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 110/244 (45%), Gaps = 42/244 (17%)
Query: 1 MMGDDKFSSHFKEPLQTSLTLDQGNRRASEVYMPESMSGNIYSERGRYLIPRQDALSLSK 60
MM ++FS F++ + S Q +R + + SMS NIY RG +L+ R D
Sbjct: 716 MMVGNQFSGQFQDQIPASHAFPQDQQRQVDAFGQGSMSDNIY--RG-FLMQRPD------ 766
Query: 61 GNITNWAAKSTGMSAPPRPHVNTGDFIGHNWFSSDHQVRLGWNGSNNVXXXXXXXXXXXX 120
W T + +P ++TG + NW Q R W +N V
Sbjct: 767 -----WNPNCTQIGVTAQPLLSTGPLLNQNW-----QFRSMWANTNGVGCTSQGSQTGTE 816
Query: 121 -------------------XXXDQSLFSVLSPCSQLR-SGSPYESVRRPDQFLAPGAYGM 160
DQSLFSVLS CSQLR S S +E Q +A G YGM
Sbjct: 817 RDPSLLRVANNAEQIIHRGSSSDQSLFSVLSQCSQLRPSRSAFEPESSSHQMVASGNYGM 876
Query: 161 L-DAGTPRINAVVPPSSHPLDYFSGRDTPSAVVPNDMTWVSLXXXXXXXALNDQMGKPYL 219
L G+ ++++ + ++PLDY SG + ++++P+D+ W + L+D +GK Y
Sbjct: 877 LMGGGSTQVSSNLVQPANPLDYLSGSNPTTSLMPDDVVW--MNQSRQNSGLHDPLGKLYP 934
Query: 220 RSWN 223
RSWN
Sbjct: 935 RSWN 938
>AT5G13950.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT1G02290.1); Has 147 Blast hits to 145 proteins
in 44 species: Archae - 0; Bacteria - 2; Metazoa - 56;
Fungi - 6; Plants - 81; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr5:4496196-4500206 REVERSE
LENGTH=939
Length = 939
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 110/244 (45%), Gaps = 42/244 (17%)
Query: 1 MMGDDKFSSHFKEPLQTSLTLDQGNRRASEVYMPESMSGNIYSERGRYLIPRQDALSLSK 60
MM ++FS F++ + S Q +R + + SMS NIY RG +L+ R D
Sbjct: 716 MMVGNQFSGQFQDQIPASHAFPQDQQRQVDAFGQGSMSDNIY--RG-FLMQRPD------ 766
Query: 61 GNITNWAAKSTGMSAPPRPHVNTGDFIGHNWFSSDHQVRLGWNGSNNVXXXXXXXXXXXX 120
W T + +P ++TG + NW Q R W +N V
Sbjct: 767 -----WNPNCTQIGVTAQPLLSTGPLLNQNW-----QFRSMWANTNGVGCTSQGSQTGTE 816
Query: 121 -------------------XXXDQSLFSVLSPCSQLR-SGSPYESVRRPDQFLAPGAYGM 160
DQSLFSVLS CSQLR S S +E Q +A G YGM
Sbjct: 817 RDPSLLRVANNAEQIIHRGSSSDQSLFSVLSQCSQLRPSRSAFEPESSSHQMVASGNYGM 876
Query: 161 L-DAGTPRINAVVPPSSHPLDYFSGRDTPSAVVPNDMTWVSLXXXXXXXALNDQMGKPYL 219
L G+ ++++ + ++PLDY SG + ++++P+D+ W + L+D +GK Y
Sbjct: 877 LMGGGSTQVSSNLVQPANPLDYLSGSNPTTSLMPDDVVW--MNQSRQNSGLHDPLGKLYP 934
Query: 220 RSWN 223
RSWN
Sbjct: 935 RSWN 938
>AT5G13950.3 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 23 plant
structures; EXPRESSED DURING: 13 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT1G02290.1). | chr5:4496196-4500206 REVERSE
LENGTH=954
Length = 954
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 74/244 (30%), Positives = 110/244 (45%), Gaps = 42/244 (17%)
Query: 1 MMGDDKFSSHFKEPLQTSLTLDQGNRRASEVYMPESMSGNIYSERGRYLIPRQDALSLSK 60
MM ++FS F++ + S Q +R + + SMS NIY RG +L+ R D
Sbjct: 731 MMVGNQFSGQFQDQIPASHAFPQDQQRQVDAFGQGSMSDNIY--RG-FLMQRPD------ 781
Query: 61 GNITNWAAKSTGMSAPPRPHVNTGDFIGHNWFSSDHQVRLGWNGSNNVXXXXXXXXXXXX 120
W T + +P ++TG + NW Q R W +N V
Sbjct: 782 -----WNPNCTQIGVTAQPLLSTGPLLNQNW-----QFRSMWANTNGVGCTSQGSQTGTE 831
Query: 121 -------------------XXXDQSLFSVLSPCSQLR-SGSPYESVRRPDQFLAPGAYGM 160
DQSLFSVLS CSQLR S S +E Q +A G YGM
Sbjct: 832 RDPSLLRVANNAEQIIHRGSSSDQSLFSVLSQCSQLRPSRSAFEPESSSHQMVASGNYGM 891
Query: 161 L-DAGTPRINAVVPPSSHPLDYFSGRDTPSAVVPNDMTWVSLXXXXXXXALNDQMGKPYL 219
L G+ ++++ + ++PLDY SG + ++++P+D+ W + L+D +GK Y
Sbjct: 892 LMGGGSTQVSSNLVQPANPLDYLSGSNPTTSLMPDDVVW--MNQSRQNSGLHDPLGKLYP 949
Query: 220 RSWN 223
RSWN
Sbjct: 950 RSWN 953