Miyakogusa Predicted Gene

Lj1g3v3904500.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3904500.1 Non Chatacterized Hit- tr|A0YQL7|A0YQL7_LYNSP
Putative uncharacterized protein OS=Lyngbya sp.
(strai,33.12,0.0000000000003,seg,NULL; DUF3529,Protein of unknown
function DUF3529,CUFF.31484.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26710.1 | Symbols: CCB1 | cofactor assembly of complex C | c...   292   2e-79

>AT3G26710.1 | Symbols: CCB1 | cofactor assembly of complex C |
           chr3:9813550-9814606 FORWARD LENGTH=267
          Length = 267

 Score =  292 bits (747), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 138/185 (74%), Positives = 152/185 (82%)

Query: 77  GYSMASYYTSLGLFVISVPGLWSLXXXXXXXXXXXXTFIGEGEKKPPNQVAGEILSFFTR 136
           GYS+ASYYTSLGLFVISVPGLWSL            TF+    KK P QVAGEILSFFTR
Sbjct: 81  GYSLASYYTSLGLFVISVPGLWSLIKRSVKSKIVRKTFVVNDVKKEPKQVAGEILSFFTR 140

Query: 137 NNFQVTDRGETVTFEGMMVPSRGQAALLTFCTCISLASVALVLTITVPDFGNNWFGITIL 196
            NF +TDRGET+TFEG MVPSRGQAALLTFCTCISLASV LVLTITVPDFGNNWF I +L
Sbjct: 141 KNFNITDRGETITFEGKMVPSRGQAALLTFCTCISLASVGLVLTITVPDFGNNWFFIILL 200

Query: 197 SPLAGAYYWTRASRKEQIKVKLIVGDDGTLSEIIVQGDDQQVEEMRKDLKFSEKGMVYVK 256
           SPLAG YYW +ASRKE+IKVK++VG  G L EI+VQGDD QVEEMRK+L+ +EKGMVYVK
Sbjct: 201 SPLAGVYYWKKASRKEEIKVKMMVGSKGRLDEIVVQGDDVQVEEMRKELQLNEKGMVYVK 260

Query: 257 GILER 261
           G+ ER
Sbjct: 261 GLFER 265