Miyakogusa Predicted Gene

Lj1g3v3904400.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3904400.1 Non Chatacterized Hit- tr|J3LXE0|J3LXE0_ORYBR
Uncharacterized protein OS=Oryza brachyantha
GN=OB04G1,28.12,2e-16,seg,NULL; coiled-coil,NULL,CUFF.31477.1
         (445 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G13970.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   166   3e-41
AT5G13310.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    83   5e-16

>AT5G13970.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: endomembrane
           system; EXPRESSED IN: 23 plant structures; EXPRESSED
           DURING: 13 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT5G13310.1);
           Has 1807 Blast hits to 1807 proteins in 277 species:
           Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
           Plants - 385; Viruses - 0; Other Eukaryotes - 339
           (source: NCBI BLink). | chr5:4506383-4507804 REVERSE
           LENGTH=404
          Length = 404

 Score =  166 bits (421), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/373 (35%), Positives = 190/373 (50%), Gaps = 75/373 (20%)

Query: 94  EPTKPSDYDDEQWEIRSGIGLDSTLDFEEEEDQYDKQAVGNENSGDRVY--MKDITDDRV 151
           E  KPSDYDDE+WEI++ IG+DSTLD EEE D  DK A+     G++VY  MKD+ DD  
Sbjct: 79  ELQKPSDYDDEEWEIKNSIGMDSTLDMEEELDDNDKVAL-----GEKVYCCMKDVNDD-- 131

Query: 152 EISPCDRVYMRDMTDDGVEISSCGVLPTKFREFERDLRANHMAARIRLKQDEEATKEIGA 211
                         D+ VE      LP  F E E+D RAN +AA++RLK+D EA  ++ +
Sbjct: 132 ---------YETEADEWVE------LPASFNEREKDPRANLIAAKLRLKEDAEAVNKLNS 176

Query: 212 LHVSEKSPPDISXXXX----------------------XXDAVNPKSILKSRENPS-EPK 248
           LHVSE+   ++S                            D    K ILK REN + + K
Sbjct: 177 LHVSEELQDNLSMSTENEKPFVVSEDNLLGAFKESHVGSSDENGLKPILKRRENQADDSK 236

Query: 249 PQKRVRFDSECDGKGDDEENEGTRDVRRKTTSMEEEEVEALNQPSKAQEFASAVPDYIRN 308
             KRVRF S+     D    EG  D   + +S  E++VEA+        + + +PDY+RN
Sbjct: 237 SPKRVRFSSDV---KDRTLTEGDNDSVMEASSPNEDKVEAV--------YPTGIPDYMRN 285

Query: 309 PSRYTHYTFDSASDMDDKANKEAYMGFLAQMKGTGSQADDALDDLP-SVTFISKKKSSDV 367
           PS+YT YTF+S  ++D+++N++AYM FL  ++       D L +LP SV F+ K+K    
Sbjct: 286 PSKYTRYTFESG-EVDEESNRKAYMDFLNMIRSKDESLVDPLMELPRSVAFVPKRKPMAE 344

Query: 368 TMVENEMVSRQKLDVGKESMNKKAFPVSIAAAGDN-ENSDVCAMEEDEPEVMEDAKKSSQ 426
           + VEN              ++K      +A A D  E+  + AMEEDEPE  +   K   
Sbjct: 345 SKVEN--------------IDKDCEGRRVAIAVDTIEDCTISAMEEDEPETAQHVTKRPG 390

Query: 427 RLNNRKYRKKPQE 439
           R    + ++ P+E
Sbjct: 391 RQYRARAKEDPEE 403


>AT5G13310.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT5G13970.1); Has 1807 Blast
           hits to 1807 proteins in 277 species: Archae - 0;
           Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
           Viruses - 0; Other Eukaryotes - 339 (source: NCBI
           BLink). | chr5:4263561-4264989 FORWARD LENGTH=370
          Length = 370

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 87/270 (32%), Positives = 122/270 (45%), Gaps = 64/270 (23%)

Query: 103 DEQWEIRSGIGLDSTLDFEEEEDQYDKQAVGNENSGDRVYMKDITDDRVEISPCDRVYMR 162
           D  W IR+ +GLD TLD E EED+YDK A+G EN G+                       
Sbjct: 101 DGVWSIRASMGLDRTLDDEAEEDEYDKVALGEENDGE----------------------- 137

Query: 163 DMTDDGVEISSCGVLPTKFREFERDLRANHMAARIRLKQDE-EATK-EIGALHVSEKSPP 220
                      CG +        RD RAN++AARIRLK+DE EA K    A   SE   P
Sbjct: 138 ----------GCGRI--------RDPRANYVAARIRLKEDEIEANKFNTSASQPSESKEP 179

Query: 221 DISXXXXXXDAVNPKSILKSRENPS--EPKPQKRVRFDSECDGKGDDEENEGTRDVRRKT 278
                    +A+  K ILK +EN S  E +  KRVRFDS  +      E+  +     K 
Sbjct: 180 ---HAEESSEAMPRKPILKRKENSSDSEARTSKRVRFDSVPEETLKKPEDTCSASASSKI 236

Query: 279 TSMEEEEVEALNQPSKAQEFASAVPDYIRNPSRYTHYTFDSASDMDDKANKEAYMGFLAQ 338
            S + +               + VPDY+ NPS YT Y+FD + ++D ++    YM     
Sbjct: 237 VSHQGKS-------------GARVPDYLLNPSSYTRYSFDPSCELDVESPTGEYMDTPNA 283

Query: 339 MKGTGSQADDALDDLPSVTFISKKKSSDVT 368
           ++G  +   ++    P V+FI + K+ DV+
Sbjct: 284 VEGLKNPESES---FPKVSFIPQNKTKDVS 310