Miyakogusa Predicted Gene

Lj1g3v3904350.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3904350.1 tr|G7KX94|G7KX94_MEDTR RING finger protein
OS=Medicago truncatula GN=MTR_7g084020 PE=4
SV=1,75.56,0,RING/U-box,NULL; no description,Zinc finger,
RING/FYVE/PHD-type; seg,NULL; zf-C3HC4,Zinc finger, C3H,CUFF.31476.1
         (743 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26730.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   637   0.0  
AT3G58030.4 | Symbols:  | RING/U-box superfamily protein | chr3:...    54   3e-07
AT3G58030.3 | Symbols:  | RING/U-box superfamily protein | chr3:...    54   3e-07
AT3G58030.2 | Symbols:  | RING/U-box superfamily protein | chr3:...    54   3e-07
AT3G58030.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    54   3e-07
AT2G42030.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    53   7e-07

>AT3G26730.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:9823770-9827270 FORWARD LENGTH=772
          Length = 772

 Score =  637 bits (1643), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/715 (50%), Positives = 467/715 (65%), Gaps = 44/715 (6%)

Query: 62  GSSTP--AAED--SGGPSEKVTELGSPNGMKASPPQNSRTHSR--------SYSGRRTVG 109
           GS  P  AAE+  S G S+++T+ G+     + P  + R H R           G    G
Sbjct: 69  GSREPSVAAEEGHSRGSSKEMTQNGAGKESFSPPNADKRDHFRYDGRRNRSRGRGTGAAG 128

Query: 110 SSPSIGRTGNRNQQAP-GSVNSHGSTSSAGRKSQMVNGNYLLNFQYDPIXXXXXXXXXXX 168
           SS S  +  +    +P G V+ H  T   GR++ M++GN+LLNFQYDPI           
Sbjct: 129 SSSSQLQHNSGPFNSPRGGVSHHNPT---GRRANMISGNHLLNFQYDPISQPQSRGPPPP 185

Query: 169 XXXXXXKRKPYNKDLFLQANYKFIVLDSGNYSPESMDPDKMLQWEDIVCVTFFTPFPVQC 228
                 K +P+NKDLFL+ANYKF+VLD+G++SP+SMDPDKMLQW+DI+CV + TP PVQC
Sbjct: 186 QRRQQYKGRPFNKDLFLKANYKFVVLDTGDHSPDSMDPDKMLQWDDIICVRYSTPSPVQC 245

Query: 229 PICLEYPLCPQITSCGHIFCFPCILQYLFLGEEDHKSDCCKRCPLCFMMISAKDLYTVHI 288
           PICLEYPLCPQITSCGHIFCFPCILQYL  G ++HK DC KRCPLCF+MIS ++LYTV+I
Sbjct: 246 PICLEYPLCPQITSCGHIFCFPCILQYLLTGVDNHKVDCFKRCPLCFVMISPRELYTVYI 305

Query: 289 TNVKQHQVGENVDFTFLTRKKDSFTLSHKNKQEIDITSCDNGYLCDPFSKFTLTSDVDLS 348
            NVKQ+ VG+ ++F  LTRKKDSF  + KN+ ++ + + +N  + DPFSKFT T DVDLS
Sbjct: 306 ENVKQYSVGDPIEFVLLTRKKDSFAPTRKNEHDLAVPNGEN-EIYDPFSKFTFTQDVDLS 364

Query: 349 VRHAISDLDGWLARADSGLVDDLEKLPYVCAAMQQLEQRKKYWNELR----------AFD 398
           VR A+S+LD W+ARAD  LV+DLEK  YV AA+++LEQRK YWNE +          A +
Sbjct: 365 VRQAVSELDSWIARADPQLVEDLEKHLYVNAALERLEQRKLYWNEHKLSIYSKVCTTARN 424

Query: 399 SEKSSKLID---YGHQIPSIAADAMDTDDENCSNGSRTSSTDSRD--LNKSIAGACQDQT 453
             +S    D    G+Q P     A D+   +    +  SS D  D     S+   C +  
Sbjct: 425 QTQSLSPPDVSRVGYQAPMGGHGAPDSGSNDQDKSTEDSSADKSDGESQSSLEKGCDN-- 482

Query: 454 LDVEKVSMEQEMKLSSSFEEKSGIQMDSNGIGDAKENDSYNFYQAADGQHLILHPLNMKC 513
            D+     +Q+   SSS     G         D K+ND+YNFYQ+ DGQH+ILH LN+KC
Sbjct: 483 -DLGHPLEDQDAPSSSSCNGSKGFLSHQIDTKDLKDNDAYNFYQSVDGQHIILHTLNVKC 541

Query: 514 LLNHYGSYDTLPHRISGRILQLETVTQSEAMRRRYRFLSHFPLTTTFQLSEIDLSEILPP 573
           LL+HYGSYD LP R+SG+IL++ET+TQSEA+RRRYRFLSHF L+TT Q+ EID+ E LPP
Sbjct: 542 LLHHYGSYDFLPPRLSGKILEMETITQSEAIRRRYRFLSHFSLSTTLQICEIDMKESLPP 601

Query: 574 EALAPFMDEIKKRSNQRKQLAKKEQRDKMK---AEASATYPFPVPSYQLTSRDD-PPFSM 629
           +A APF+ EIKKR  QRK+ A K++++K+K   A A+   P      Q +S DD PPFS+
Sbjct: 602 DAFAPFIHEIKKREKQRKERAWKDRKNKIKAEVAAAAELVPLMASFGQSSSSDDFPPFSL 661

Query: 630 DDFEALGNSA-MSSSPPLVGERRLFSSVTRLGFAAGHDSPSLQIQEETSGPYNNNKSTDS 688
           DDFEALGNSA +SSSPP +GER  FS VTRLGFAAGHDSP+L   E T+   +++ S  S
Sbjct: 662 DDFEALGNSAPISSSPPNIGERSSFSHVTRLGFAAGHDSPNLN-NEPTNVQSSSSSSEVS 720

Query: 689 SGTAGSRNGETPSYSNVISRAESNNSLNAPKTNDVGKKGKKPNRVLLSTAGVRRY 743
           + T G+RN    S+++V SR     +  AP   + GK+GKK +RVLLST  VRRY
Sbjct: 721 NATTGARNTNITSFASVASRT---TTPMAPTVKEPGKRGKKQSRVLLSTTSVRRY 772


>AT3G58030.4 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 228 CPICLEYPLCPQITSCGHIFCFPCILQYLFLGEEDHKSDCCKRCPLCFMMISAKDLYTVH 287
           C ICL+    P +T CGH++C+PC+ Q+L + +        K CP+C   +++K +  ++
Sbjct: 139 CNICLDLSKEPVLTCCGHLYCWPCLYQWLQISD-------AKECPVCKGEVTSKTVTPIY 191

Query: 288 ITNVKQHQVGENVD 301
                + ++ E++D
Sbjct: 192 GRGNHKREIEESLD 205


>AT3G58030.3 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 228 CPICLEYPLCPQITSCGHIFCFPCILQYLFLGEEDHKSDCCKRCPLCFMMISAKDLYTVH 287
           C ICL+    P +T CGH++C+PC+ Q+L + +        K CP+C   +++K +  ++
Sbjct: 139 CNICLDLSKEPVLTCCGHLYCWPCLYQWLQISD-------AKECPVCKGEVTSKTVTPIY 191

Query: 288 ITNVKQHQVGENVD 301
                + ++ E++D
Sbjct: 192 GRGNHKREIEESLD 205


>AT3G58030.2 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 228 CPICLEYPLCPQITSCGHIFCFPCILQYLFLGEEDHKSDCCKRCPLCFMMISAKDLYTVH 287
           C ICL+    P +T CGH++C+PC+ Q+L + +        K CP+C   +++K +  ++
Sbjct: 139 CNICLDLSKEPVLTCCGHLYCWPCLYQWLQISD-------AKECPVCKGEVTSKTVTPIY 191

Query: 288 ITNVKQHQVGENVD 301
                + ++ E++D
Sbjct: 192 GRGNHKREIEESLD 205


>AT3G58030.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:21485527-21486837 FORWARD LENGTH=436
          Length = 436

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/74 (28%), Positives = 42/74 (56%), Gaps = 7/74 (9%)

Query: 228 CPICLEYPLCPQITSCGHIFCFPCILQYLFLGEEDHKSDCCKRCPLCFMMISAKDLYTVH 287
           C ICL+    P +T CGH++C+PC+ Q+L + +        K CP+C   +++K +  ++
Sbjct: 139 CNICLDLSKEPVLTCCGHLYCWPCLYQWLQISD-------AKECPVCKGEVTSKTVTPIY 191

Query: 288 ITNVKQHQVGENVD 301
                + ++ E++D
Sbjct: 192 GRGNHKREIEESLD 205


>AT2G42030.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:17539069-17540346 REVERSE LENGTH=425
          Length = 425

 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 7/71 (9%)

Query: 228 CPICLEYPLCPQITSCGHIFCFPCILQYLFLGEEDHKSDCCKRCPLCFMMISAKDLYTVH 287
           C ICL+    P +T+CGH++C+ C+ Q+L + E        K CP+C   +S K +  ++
Sbjct: 141 CYICLDLSKDPVVTNCGHLYCWSCLYQWLQVSE-------AKECPVCKGEVSVKTVTPIY 193

Query: 288 ITNVKQHQVGE 298
              +++ +  E
Sbjct: 194 GRGIQKRESEE 204