Miyakogusa Predicted Gene

Lj1g3v3904340.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3904340.1 NODE_65629_length_412_cov_7.859223.path1.1
         (82 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G26730.1 | Symbols:  | RING/U-box superfamily protein | chr3:...    64   2e-11

>AT3G26730.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:9823770-9827270 FORWARD LENGTH=772
          Length = 772

 Score = 63.9 bits (154), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 47  AADGQHLILHPLNMKCLLHHYGSYDTLPHRISGRIL 82
           + DGQH+ILH LN+KCLLHHYGSYD LP R+SG+IL
Sbjct: 526 SVDGQHIILHTLNVKCLLHHYGSYDFLPPRLSGKIL 561