Miyakogusa Predicted Gene

Lj1g3v3904260.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3904260.1 Non Chatacterized Hit- tr|K4BIA2|K4BIA2_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=Sol,53.33,2e-16,seg,NULL; coiled-coil,NULL,CUFF.31448.1
         (190 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G31410.1 | Symbols:  | unknown protein; Has 1719 Blast hits t...   168   2e-42

>AT2G31410.1 | Symbols:  | unknown protein; Has 1719 Blast hits to
           1091 proteins in 184 species: Archae - 5; Bacteria - 24;
           Metazoa - 559; Fungi - 169; Plants - 192; Viruses - 1;
           Other Eukaryotes - 769 (source: NCBI BLink). |
           chr2:13392220-13392819 REVERSE LENGTH=199
          Length = 199

 Score =  168 bits (425), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 95/192 (49%), Positives = 121/192 (63%), Gaps = 7/192 (3%)

Query: 1   MACTIDFRNLDEGFGGKTYKRKREQAQALEDALFNNDGVDSMDTDEAAPPPAKRTALPSS 60
           MACT+DFR LDEGFGGKTYKRKRE  +        ++   SMD D  APP AKR+A+ SS
Sbjct: 1   MACTVDFRCLDEGFGGKTYKRKRESQEQAAAEAIADE--ASMDID-GAPPAAKRSAVASS 57

Query: 61  EDPNKP---SFGQPSYDGVIAGRVSGRKWKQVRTRRSSAVNVSRKGTTFEQREREKMIKK 117
           E+P+KP   +  +P+YDGVIAG+VSGR WKQ RT RSS   V  +    E+ +R++ IKK
Sbjct: 58  ENPDKPIALAVERPTYDGVIAGKVSGRNWKQPRTHRSSGRFVKNRKPDLEEMKRQREIKK 117

Query: 118 AYKERITELXXXXXXXXXXXXXXXXXXXXXXXXXILKSGTKFQKITNPNTLKKIAKS-KQ 176
           AYKER+ EL                         +L++GTK QKITNP TLKKI+ S KQ
Sbjct: 118 AYKERVNELKEEIRSNKVEKRKKKEEREKRKKENVLRTGTKLQKITNPKTLKKISMSKKQ 177

Query: 177 RKQLRVVSDDLF 188
           RKQL+ + D++ 
Sbjct: 178 RKQLKKIPDEML 189