Miyakogusa Predicted Gene

Lj1g3v3903020.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3903020.1 Non Chatacterized Hit- tr|C0P5C2|C0P5C2_MAIZE
Uncharacterized protein OS=Zea mays PE=2 SV=1,46.43,2e-18,no
description,Nucleic acid-binding, OB-fold; seg,NULL; SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,N,gene.g35607.t1.1
         (205 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46190.1 | Symbols:  | RNA-binding KH domain-containing prote...    97   9e-21
AT2G16440.1 | Symbols: MCM4 | Minichromosome maintenance (MCM2/3...    94   8e-20
AT4G18375.2 | Symbols:  | RNA-binding KH domain-containing prote...    87   6e-18
AT4G18375.1 | Symbols:  | RNA-binding KH domain-containing prote...    87   7e-18

>AT5G46190.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr5:18723435-18725834 REVERSE LENGTH=644
          Length = 644

 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 63/74 (85%), Gaps = 1/74 (1%)

Query: 97  TVKSMRQASGARIEVDDSKANHDE-CLIIITTTESPSDLKSMSVEAVLLIKGKISDEDDT 155
           T+K +RQASG+ IEV+DS+ NHD+ C+I +T TESP DLKSM+VEAVLL++ KI+DED+ 
Sbjct: 338 TIKGIRQASGSHIEVNDSRTNHDDDCVITVTATESPDDLKSMAVEAVLLLQEKINDEDED 397

Query: 156 EVSIQLLVPSKVIG 169
           +V +QLLV SKVIG
Sbjct: 398 KVKMQLLVSSKVIG 411


>AT2G16440.1 | Symbols: MCM4 | Minichromosome maintenance (MCM2/3/5)
           family protein | chr2:7126536-7130665 REVERSE LENGTH=847
          Length = 847

 Score = 93.6 bits (231), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/116 (45%), Positives = 66/116 (56%), Gaps = 25/116 (21%)

Query: 6   AEFSDKHIVRLPETPDEIPGGGMLHIVSLLMQDKLTEAGKPGGRVEI------------- 52
             F+DK IVRL ETPDEIP GG  H VSLL+ DKL + GKPG R+E+             
Sbjct: 312 CRFADKQIVRLQETPDEIPEGGTPHTVSLLLHDKLVDNGKPGDRIEVTGIYRAMTVRVGP 371

Query: 53  -----------YIDCLHIKKSVKSRMLIEDTIEVENTEGKKAE-VTFDEEKVMQQQ 96
                      YIDCLHIKK+ K RM  ED ++V+N+  +  E V  DEEK+ + Q
Sbjct: 372 AHRTVKSVFKTYIDCLHIKKASKLRMSAEDPMDVDNSLRRVDEDVELDEEKLRKFQ 427


>AT4G18375.2 | Symbols:  | RNA-binding KH domain-containing protein
           | chr4:10152825-10155125 FORWARD LENGTH=606
          Length = 606

 Score = 87.4 bits (215), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 2/75 (2%)

Query: 97  TVKSMRQASGARIEVDDS--KANHDECLIIITTTESPSDLKSMSVEAVLLIKGKISDEDD 154
           T+K +R+ASG+ IEV+DS  K   DEC+II+T TESP D+KSM+VEAVLL++  I+DED 
Sbjct: 333 TIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYINDEDA 392

Query: 155 TEVSIQLLVPSKVIG 169
             V +QLLV SKVIG
Sbjct: 393 ENVKMQLLVSSKVIG 407


>AT4G18375.1 | Symbols:  | RNA-binding KH domain-containing protein
           | chr4:10152825-10154836 FORWARD LENGTH=532
          Length = 532

 Score = 87.0 bits (214), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 59/75 (78%), Gaps = 2/75 (2%)

Query: 97  TVKSMRQASGARIEVDDS--KANHDECLIIITTTESPSDLKSMSVEAVLLIKGKISDEDD 154
           T+K +R+ASG+ IEV+DS  K   DEC+II+T TESP D+KSM+VEAVLL++  I+DED 
Sbjct: 333 TIKRIREASGSCIEVNDSRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYINDEDA 392

Query: 155 TEVSIQLLVPSKVIG 169
             V +QLLV SKVIG
Sbjct: 393 ENVKMQLLVSSKVIG 407