Miyakogusa Predicted Gene

Lj1g3v3902680.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3902680.1 tr|G7JGN1|G7JGN1_MEDTR F-box protein OS=Medicago
truncatula GN=MTR_4g116330 PE=4 SV=1,29.28,2e-18, ,CUFF.31418.1
         (344 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G06240.1 | Symbols:  | F-box family protein | chr3:1887336-18...    48   8e-06

>AT3G06240.1 | Symbols:  | F-box family protein |
           chr3:1887336-1888619 FORWARD LENGTH=427
          Length = 427

 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 32/231 (13%)

Query: 82  VVIILNPATGNRRRIAWVYADHHQPRRPPAGKISLVRDKVLR-GIGYDDIQEDYLIIQVE 140
            V + NP TG+ +R+   +       RP +  +   RD     G G+D + +DY ++++ 
Sbjct: 181 AVFLYNPTTGDSKRLPENF-------RPKS--VEYERDNFQTYGFGFDGLTDDYKLVKLV 231

Query: 141 C---HIPRVNVFSLATNSSGYILDFGVGIGGYEPLGDDYAVGVFANKGLHWLVRKTDTNQ 197
                I   +V+SL  +S   I +       YE     Y  GV  N  +HW+  ++  NQ
Sbjct: 232 ATSEDILDASVYSLKADSWRRICNLN-----YEHNDGSYTSGVHFNGAIHWVFTESRHNQ 286

Query: 198 IIILFFHLPSRTLTETEVPTFMQVEEGGVRGNKKYFLSLIGSSLGLVYESGQGPRGCAKI 257
            +++ F + +    E  VP   + E+   R    +   ++GS  G +            I
Sbjct: 287 RVVVAFDIQTEEFREMPVPD--EAEDCSHR----FSNFVVGSLNGRLCVVNSCYDVHDDI 340

Query: 258 WVMD---NANAWIEL-VNLPLQDYNWNFIPLCVTTNGSILGSHRDGLLMKF 304
           WVM     A +W  + +NL  +    +  PLC T N   +    DG L+ +
Sbjct: 341 WVMSEYGEAKSWSRIRINLLYR----SMKPLCSTKNDEEVLLELDGDLVLY 387