Miyakogusa Predicted Gene

Lj1g3v3891930.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3891930.3 tr|G7KPD6|G7KPD6_MEDTR Rop guanine nucleotide
exchange factor OS=Medicago truncatula
GN=MTR_6g087700,70.21,0.0000005,PRONE,Plant specific Rop nucleotide
exchanger, PRONE,CUFF.31366.3
         (58 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24620.1 | Symbols: ATROPGEF8, ROPGEF8 | RHO guanyl-nucleotid...    54   1e-08
AT4G13240.1 | Symbols: ATROPGEF9, ROPGEF9 | RHO guanyl-nucleotid...    53   4e-08
AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO guanyl-...    53   5e-08
AT1G79860.1 | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO guanyl-...    52   1e-07
AT3G16130.1 | Symbols: ATROPGEF13, ROPGEF13, PIRF2 | RHO guanyl-...    51   1e-07
AT5G19560.1 | Symbols: ATROPGEF10, ROPGEF10 | ROP uanine nucleot...    51   1e-07
AT5G02010.1 | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotid...    50   2e-07
AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotid...    49   5e-07
AT5G05940.1 | Symbols: ATROPGEF5, ROPGEF5 | ROP guanine nucleoti...    49   7e-07

>AT3G24620.1 | Symbols: ATROPGEF8, ROPGEF8 | RHO guanyl-nucleotide
           exchange factor 8 | chr3:8980695-8982793 REVERSE
           LENGTH=523
          Length = 523

 Score = 54.3 bits (129), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/40 (70%), Positives = 29/40 (72%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RFAKLLLGED+SG G   SS LALS AITNLA   FG
Sbjct: 89  MKDRFAKLLLGEDMSGGGKGVSSALALSNAITNLAASIFG 128


>AT4G13240.1 | Symbols: ATROPGEF9, ROPGEF9 | RHO guanyl-nucleotide
           exchange factor 9 | chr4:7680153-7682414 FORWARD
           LENGTH=517
          Length = 517

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 28/40 (70%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RF KLLLGED+SG G   SS LALS AITNLA   FG
Sbjct: 78  MKDRFTKLLLGEDMSGGGKGVSSALALSNAITNLAASIFG 117


>AT1G52240.1 | Symbols: ATROPGEF11, ROPGEF11, PIRF1 | RHO
           guanyl-nucleotide exchange factor 11 |
           chr1:19455766-19459235 REVERSE LENGTH=607
          Length = 607

 Score = 52.8 bits (125), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 29/40 (72%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  +F+KLLLGED+SG G   SS LALS AITNLA   FG
Sbjct: 172 MKEKFSKLLLGEDMSGGGKGVSSALALSNAITNLAASAFG 211


>AT1G79860.1 | Symbols: ATROPGEF12, ROPGEF12, MEE64 | RHO
           guanyl-nucleotide exchange factor 12 |
           chr1:30042172-30044092 REVERSE LENGTH=515
          Length = 515

 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/40 (67%), Positives = 28/40 (70%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RF+KLLLGED SG G   SS LALS AITNLA   FG
Sbjct: 96  MKERFSKLLLGEDNSGGGKGVSSALALSNAITNLAASVFG 135


>AT3G16130.1 | Symbols: ATROPGEF13, ROPGEF13, PIRF2 | RHO
           guanyl-nucleotide exchange factor 13 |
           chr3:5466246-5468512 FORWARD LENGTH=576
          Length = 576

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 28/40 (70%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  +FAKLLLGED+SG     SS LALS AITNLA   FG
Sbjct: 132 MKDKFAKLLLGEDMSGGSKGVSSALALSNAITNLAASAFG 171


>AT5G19560.1 | Symbols: ATROPGEF10, ROPGEF10 | ROP uanine
          nucleotide exchange factor 10 | chr5:6603291-6606130
          FORWARD LENGTH=493
          Length = 493

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/40 (65%), Positives = 28/40 (70%)

Query: 1  MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
          M  RFAKLLLGED+SG G   +S LALS AIT LA   FG
Sbjct: 48 MKERFAKLLLGEDMSGGGTGETSALALSNAITKLADSMFG 87


>AT5G02010.1 | Symbols: ATROPGEF7, ROPGEF7 | RHO guanyl-nucleotide
           exchange factor 7 | chr5:383493-385698 FORWARD
           LENGTH=546
          Length = 546

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 29/40 (72%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RF+KLLLGED+SG+GN   + LA+S AITNL    FG
Sbjct: 74  MKERFSKLLLGEDMSGSGNGVCTALAISNAITNLCATLFG 113


>AT4G38430.1 | Symbols: ATROPGEF1, ROPGEF1 | rho guanyl-nucleotide
           exchange factor 1 | chr4:17986643-17988659 FORWARD
           LENGTH=548
          Length = 548

 Score = 49.3 bits (116), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 28/40 (70%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RFAKLLLGED+SG G    + LA+S AITNL+   FG
Sbjct: 94  MKERFAKLLLGEDMSGGGKGVCTALAISNAITNLSATVFG 133


>AT5G05940.1 | Symbols: ATROPGEF5, ROPGEF5 | ROP guanine nucleotide
           exchange factor 5 | chr5:1786028-1788363 FORWARD
           LENGTH=611
          Length = 611

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/40 (60%), Positives = 28/40 (70%)

Query: 1   MTFRFAKLLLGEDISGAGNDASSTLALSYAITNLATQHFG 40
           M  RFAKLLLGED+SG+G    + LA+S AITNL    FG
Sbjct: 106 MKERFAKLLLGEDMSGSGKGVCTALAISNAITNLCATIFG 145