Miyakogusa Predicted Gene

Lj1g3v3835810.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3835810.1 Non Chatacterized Hit- tr|I3S3Z9|I3S3Z9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,37.5,2e-17,FBD,FBD; domain in FBox and BRCT domain containing
pl,FBD,CUFF.31274.1
         (191 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G22730.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    49   2e-06
AT5G56820.1 | Symbols:  | F-box/RNI-like/FBD-like domains-contai...    47   9e-06

>AT5G22730.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:7551632-7553219
           REVERSE LENGTH=466
          Length = 466

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 13/145 (8%)

Query: 53  YFNEFLCKFADIPIFPNLIHMELTLGGRIKMESLLYFLN-------HCPRLQNLVMENLF 105
           +F EFL  + D    P   ++      R+K E  LYFL         CP L++LVM   F
Sbjct: 325 HFVEFLYYYKDFDPLPQFCNL-----SRLKAEISLYFLEILPTILESCPNLKSLVMVLEF 379

Query: 106 SIDSRNWPNTLVA-SECFSSQLRTCFLPCFTGTDSELRFSKFVMQNSTLLGSMKIIGHSL 164
            +   + P    +   C  S L +  +  F G  +++  +++ ++NS +L  + +     
Sbjct: 380 YLQEEDEPIIFSSVPRCLVSSLESVEIKKFNGRPAKMEVARYFLENSGVLQKLVLHLRCS 439

Query: 165 SHEKKAKMRIELDSCPRSSANCQLL 189
           +HE    +  +L + PR S+ C+++
Sbjct: 440 THEDGFYILKDLLALPRGSSTCRIV 464


>AT5G56820.1 | Symbols:  | F-box/RNI-like/FBD-like
           domains-containing protein | chr5:22976334-22977838
           FORWARD LENGTH=435
          Length = 435

 Score = 46.6 bits (109), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 11/136 (8%)

Query: 66  IFPNLIHMELTLGGRIKMESLLYFLNHCPRLQNLVMENLFSIDSRNWPNTLV-----ASE 120
           IF  L+++EL L  R+  + +L  L H P LQ L +        ++ PN  V       E
Sbjct: 290 IFHQLLYLELHLHKRLNGDRILSLLKHSPNLQTLKLNEKPLRSIKDQPNISVRKPNSVPE 349

Query: 121 CFSSQLRTCFLPCFTGTDSELRFSKFVMQNSTLLGSMKIIGH----SLSHEKKAKMRI-- 174
           C +  L T     + G   +   + +++ N+  L +  I  +       H +K  ++I  
Sbjct: 350 CLTFHLETLEWQGYAGRPEDKEIAVYILGNALRLNTATISRYFSSSRFRHHQKKDLKIVE 409

Query: 175 ELDSCPRSSANCQLLF 190
           EL S  ++S +CQL+ 
Sbjct: 410 ELKSITKASTSCQLVL 425