Miyakogusa Predicted Gene
- Lj1g3v3835720.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3835720.1 Non Chatacterized Hit- tr|D7MJ07|D7MJ07_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,72.06,3e-16,DUF3339,Protein of unknown function
DUF3339,CUFF.31266.1
(68 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G40960.1 | Symbols: | Protein of unknown function (DUF 3339)... 89 6e-19
AT3G48660.1 | Symbols: | Protein of unknown function (DUF 3339)... 69 7e-13
AT5G08391.1 | Symbols: | Protein of unknown function (DUF 3339)... 69 8e-13
AT5G63500.1 | Symbols: | Protein of unknown function (DUF 3339)... 68 1e-12
AT3G27027.1 | Symbols: | Protein of unknown function (DUF 3339)... 64 3e-11
AT3G27030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 62 1e-10
AT5G40980.1 | Symbols: | Protein of unknown function (DUF 3339)... 61 2e-10
AT3G01950.1 | Symbols: | Protein of unknown function (DUF 3339)... 60 2e-10
AT5G14110.1 | Symbols: | Protein of unknown function (DUF 3339)... 57 2e-09
AT5G40970.1 | Symbols: | Protein of unknown function (DUF 3339)... 57 2e-09
AT3G01940.1 | Symbols: | Protein of unknown function (DUF 3339)... 50 3e-07
>AT5G40960.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr5:16412745-16412951 REVERSE LENGTH=68
Length = 68
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 50/67 (74%), Positives = 58/67 (86%)
Query: 1 MNDWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIYGLFLMLFFI 60
M+DWA PLIA+ALF LSPG+I Q PGK +P FMNMKTTVASIFVHTV+YGLFL+LF +
Sbjct: 1 MHDWAAPLIASALFAFLSPGLILQFPGKESPVGFMNMKTTVASIFVHTVLYGLFLILFLV 60
Query: 61 VLSVHVY 67
VL+VHVY
Sbjct: 61 VLNVHVY 67
>AT3G48660.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr3:18029659-18030133 FORWARD LENGTH=89
Length = 89
Score = 68.9 bits (167), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 30/67 (44%), Positives = 46/67 (68%)
Query: 1 MNDWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIYGLFLMLFFI 60
M DW P ++A LF LL+PG++FQ+P + EF NM+T+ ASI VHT+I+ + +F I
Sbjct: 1 MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60
Query: 61 VLSVHVY 67
+ +H+Y
Sbjct: 61 AIRLHIY 67
>AT5G08391.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr5:2699357-2699566 FORWARD LENGTH=69
Length = 69
Score = 68.6 bits (166), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%)
Query: 1 MNDWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIYGLFLMLFFI 60
M+DW P L+ LF +L+PG++FQLPG+ EF N +T+ S+ VH+++Y + +F +
Sbjct: 1 MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60
Query: 61 VLSVHVYI 68
L +H+YI
Sbjct: 61 ALKIHIYI 68
>AT5G63500.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr5:25423460-25423669 FORWARD LENGTH=69
Length = 69
Score = 67.8 bits (164), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 45/67 (67%)
Query: 1 MNDWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIYGLFLMLFFI 60
M DW P LIA LF +LSPG++FQ+P EF NM+T+ ASI VH +I+ + +F I
Sbjct: 1 MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60
Query: 61 VLSVHVY 67
++VH+Y
Sbjct: 61 AINVHIY 67
>AT3G27027.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr3:9971921-9972130 FORWARD LENGTH=69
Length = 69
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 41/66 (62%)
Query: 2 NDWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIYGLFLMLFFIV 61
DW P ++A +LF LLSPG++FQLP + EF NM T+ +I VH IY L + I
Sbjct: 3 TDWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIA 62
Query: 62 LSVHVY 67
+ +H++
Sbjct: 63 IQIHIH 68
>AT3G27030.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; CONTAINS InterPro DOMAIN/s: Protein of unknown
function DUF3339 (InterPro:IPR021775); BEST Arabidopsis
thaliana protein match is: Protein of unknown function
(DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271
proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr3:9972508-9974225 REVERSE LENGTH=142
Length = 142
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%)
Query: 1 MNDWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIYGLFLMLFFI 60
M DWAP L+ LF +LSPG++F LPG N +F +KT +I VHT+I+ + +
Sbjct: 74 MADWAPVLVGVVLFVILSPGLLFSLPGNNRTVDFGGLKTNGKAIAVHTLIFFAIYTILIL 133
Query: 61 VLSVHVY 67
L++H+Y
Sbjct: 134 ALNLHIY 140
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 1 MNDWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIYGLFLMLFFI 60
M DW P +A LF LL+PG++ Q+PG+ EF +T+ S+ VHT+IY + + +
Sbjct: 1 MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60
Query: 61 VLSVHV 66
L +H+
Sbjct: 61 ALQIHI 66
>AT5G40980.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr5:16414877-16415086 REVERSE LENGTH=69
Length = 69
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 34/49 (69%)
Query: 3 DWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIY 51
DW P ++A ALF LLSPG++FQLP + EF NM T+ SI VH +IY
Sbjct: 4 DWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIY 52
>AT3G01950.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr3:324026-324238 FORWARD LENGTH=70
Length = 70
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 3 DWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIYGLFLMLFFIVL 62
DW P L++ F +LSPG++FQLPGK+ EF +T+ SI +HT+++ F+ + I L
Sbjct: 4 DWGPVLMSVIFFIVLSPGVLFQLPGKSKAVEFGGFQTSGPSIVIHTLLFFAFITISLIAL 63
Query: 63 SVHVY 67
+H+Y
Sbjct: 64 HIHIY 68
>AT5G14110.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr5:4553964-4554176 REVERSE LENGTH=70
Length = 70
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 44/66 (66%)
Query: 3 DWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIYGLFLMLFFIVL 62
+W P L++ LF +L+PG++FQLPGK EF +T+ A+I +HT+I+ + + I L
Sbjct: 4 NWGPVLMSVFLFIVLTPGVLFQLPGKTKVVEFGGFQTSGAAIVIHTLIFFACITVSIIAL 63
Query: 63 SVHVYI 68
+H+Y+
Sbjct: 64 HIHIYV 69
>AT5G40970.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr5:16414081-16414290 FORWARD LENGTH=69
Length = 69
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 1 MNDWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIYGLFLMLFFI 60
M DWAP L+ LF +LSPG++F LPG + +F MKT +I VHT+I+ F +
Sbjct: 1 MADWAPVLVGVVLFVILSPGLLFSLPGHHHTLQFGGMKTNGKAIAVHTLIF--FAAYTIL 58
Query: 61 VLSVHVYI 68
+L+V+++I
Sbjct: 59 ILAVNLHI 66
>AT3G01940.1 | Symbols: | Protein of unknown function (DUF 3339)
| chr3:322841-323053 REVERSE LENGTH=70
Length = 70
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 3 DWAPPLIAAALFWLLSPGMIFQLPGKNAPFEFMNMKTTVASIFVHTVIYGLFLMLFFIVL 62
DW P +A LF +LSPG++FQLP + E NM T+ SI VH +++ + + I +
Sbjct: 5 DWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIAI 64
Query: 63 SVHVYI 68
+H++I
Sbjct: 65 QIHIHI 70