Miyakogusa Predicted Gene

Lj1g3v3834310.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3834310.1 tr|I3SFH0|I3SFH0_MEDTR DNA replication complex
GINS protein PSF2 OS=Medicago truncatula PE=2 SV=1,81.99,0,DNA
REPLICATION COMPLEX GINS PROTEIN PSF2,GINS complex, subunit Psf2;
Sld5,GINS complex,CUFF.31241.1
         (211 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G12530.1 | Symbols: PSF2 | PSF2 | chr3:3972604-3973864 REVERS...   254   3e-68
AT3G12530.2 | Symbols: PSF2 | PSF2 | chr3:3972604-3973728 REVERS...   249   1e-66

>AT3G12530.1 | Symbols: PSF2 | PSF2 | chr3:3972604-3973864 REVERSE
           LENGTH=210
          Length = 210

 Score =  254 bits (648), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 128/211 (60%), Positives = 156/211 (73%), Gaps = 2/211 (0%)

Query: 1   MAGQSDNXXXXXXXXXXXXIAEDETVEIVPKFKMDPLCFISGDFGPFSPNVPTQVPIWLA 60
           MAGQ+D             +AEDE VEIVP   M+ L FISGDFG F P +PT+VP+WLA
Sbjct: 1   MAGQTDPHISLFSPQEVEFMAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLA 60

Query: 61  IALKKRSKCVIRPPQWMTVEKLTQILEAERDSQEMSEQLPFHYIEISRLLFNHARDNIAD 120
           +ALK+R KC  RPP WM+V+ LTQILEAER+SQ   + LPF Y+EI+RLLF+HARD+I D
Sbjct: 61  VALKRRGKCTFRPPGWMSVDNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPD 120

Query: 121 DYMVRSLIEDIRNVRFHKIETDLEAFNGRTIAVKIKNLSAMEVNIVRPFIGRALQAFYKH 180
            YMVRSL+EDIR+VR HK+ET+L +F G T AVKI N+SAMEVNIVRPF+ RAL+AFYKH
Sbjct: 121 MYMVRSLVEDIRDVRLHKLETNLGSFQG-TSAVKISNVSAMEVNIVRPFVIRALEAFYKH 179

Query: 181 DSPDLIPDPERVSDRRPQAANNNAPRRQLRR 211
           D P+   D +  S R+ Q   NN PRR LR+
Sbjct: 180 DKPEADVDRDTRSSRQ-QRETNNEPRRPLRQ 209


>AT3G12530.2 | Symbols: PSF2 | PSF2 | chr3:3972604-3973728 REVERSE
           LENGTH=191
          Length = 191

 Score =  249 bits (635), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/192 (64%), Positives = 150/192 (78%), Gaps = 2/192 (1%)

Query: 20  IAEDETVEIVPKFKMDPLCFISGDFGPFSPNVPTQVPIWLAIALKKRSKCVIRPPQWMTV 79
           +AEDE VEIVP   M+ L FISGDFG F P +PT+VP+WLA+ALK+R KC  RPP WM+V
Sbjct: 1   MAEDELVEIVPNMNMEQLNFISGDFGRFIPQIPTKVPLWLAVALKRRGKCTFRPPGWMSV 60

Query: 80  EKLTQILEAERDSQEMSEQLPFHYIEISRLLFNHARDNIADDYMVRSLIEDIRNVRFHKI 139
           + LTQILEAER+SQ   + LPF Y+EI+RLLF+HARD+I D YMVRSL+EDIR+VR HK+
Sbjct: 61  DNLTQILEAERESQSTFQALPFSYVEIARLLFDHARDDIPDMYMVRSLVEDIRDVRLHKL 120

Query: 140 ETDLEAFNGRTIAVKIKNLSAMEVNIVRPFIGRALQAFYKHDSPDLIPDPERVSDRRPQA 199
           ET+L +F G T AVKI N+SAMEVNIVRPF+ RAL+AFYKHD P+   D +  S R+ Q 
Sbjct: 121 ETNLGSFQG-TSAVKISNVSAMEVNIVRPFVIRALEAFYKHDKPEADVDRDTRSSRQ-QR 178

Query: 200 ANNNAPRRQLRR 211
             NN PRR LR+
Sbjct: 179 ETNNEPRRPLRQ 190