Miyakogusa Predicted Gene

Lj1g3v3834280.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3834280.1 Non Chatacterized Hit- tr|A5AQV3|A5AQV3_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,56.19,7e-18,
,CUFF.31246.1
         (98 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G01860.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    67   3e-12
AT3G01860.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    63   4e-11
AT3G27210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    55   1e-08
AT5G40860.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...    49   7e-07

>AT3G01860.1 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN: response to
          cadmium ion; LOCATED IN: chloroplast; EXPRESSED IN: 24
          plant structures; EXPRESSED DURING: 13 growth stages;
          BEST Arabidopsis thaliana protein match is: unknown
          protein (TAIR:AT3G27210.1); Has 66 Blast hits to 66
          proteins in 13 species: Archae - 0; Bacteria - 0;
          Metazoa - 5; Fungi - 0; Plants - 61; Viruses - 0; Other
          Eukaryotes - 0 (source: NCBI BLink). |
          chr3:302869-304329 FORWARD LENGTH=223
          Length = 223

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 7/58 (12%)

Query: 42 NGNFLNSQSPPSRSTTIINGSKEE-VFFESKVWLDSDCDDDFYSVNGEFTPSRGSTPV 98
          NGN      PP  S    +G+KE+ +FF+S+ WLDSDCDDDF SV GEFTPSRG+TPV
Sbjct: 47 NGN------PPIDSGRWDSGNKEDMIFFDSRGWLDSDCDDDFMSVGGEFTPSRGTTPV 98


>AT3G01860.2 | Symbols:  | unknown protein; FUNCTIONS IN:
          molecular_function unknown; INVOLVED IN: response to
          cadmium ion; EXPRESSED IN: 24 plant structures;
          EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
          thaliana protein match is: unknown protein
          (TAIR:AT3G27210.1); Has 64 Blast hits to 64 proteins in
          13 species: Archae - 0; Bacteria - 0; Metazoa - 5;
          Fungi - 0; Plants - 59; Viruses - 0; Other Eukaryotes -
          0 (source: NCBI BLink). | chr3:303767-304329 FORWARD
          LENGTH=159
          Length = 159

 Score = 63.2 bits (152), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 30/33 (90%)

Query: 66 VFFESKVWLDSDCDDDFYSVNGEFTPSRGSTPV 98
          +FF+S+ WLDSDCDDDF SV GEFTPSRG+TPV
Sbjct: 2  IFFDSRGWLDSDCDDDFMSVGGEFTPSRGTTPV 34


>AT3G27210.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: N-terminal
           protein myristoylation; LOCATED IN: plasma membrane;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT5G40860.1); Has 133 Blast
           hits to 98 proteins in 25 species: Archae - 0; Bacteria
           - 6; Metazoa - 32; Fungi - 7; Plants - 70; Viruses - 0;
           Other Eukaryotes - 18 (source: NCBI BLink). |
           chr3:10045458-10047222 REVERSE LENGTH=234
          Length = 234

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/34 (67%), Positives = 29/34 (85%)

Query: 64  EEVFFESKVWLDSDCDDDFYSVNGEFTPSRGSTP 97
           +E FF+S+ WL SD DDDF+SVNG+FTPS G+TP
Sbjct: 82  DETFFDSQPWLQSDSDDDFHSVNGDFTPSLGNTP 115


>AT5G40860.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT3G27210.1); Has 69 Blast hits to 69 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 2
           (source: NCBI BLink). | chr5:16370470-16371985 FORWARD
           LENGTH=246
          Length = 246

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 20/34 (58%), Positives = 26/34 (76%)

Query: 64  EEVFFESKVWLDSDCDDDFYSVNGEFTPSRGSTP 97
           +E +F+S  W  SD +DDFYSV G+FTPS G+TP
Sbjct: 91  DETYFDSHQWQQSDSEDDFYSVRGDFTPSVGNTP 124