Miyakogusa Predicted Gene
- Lj1g3v3833930.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3833930.1 Non Chatacterized Hit- tr|I1L673|I1L673_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.52547
PE,34.93,6e-18,"Winged helix" DNA-binding domain,NULL; seg,NULL;
Rad21_Rec8_N,Rad21/Rec8-like protein, N-terminal; ,CUFF.31211.1
(943 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G40840.2 | Symbols: SYN2 | Rad21/Rec8-like family protein | c... 159 1e-38
AT5G40840.1 | Symbols: SYN2, AtRAD21.1 | Rad21/Rec8-like family ... 159 1e-38
AT5G16270.1 | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesi... 96 1e-19
AT5G40840.3 | Symbols: SYN2 | Rad21/Rec8-like family protein | c... 96 2e-19
AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like... 81 4e-15
>AT5G40840.2 | Symbols: SYN2 | Rad21/Rec8-like family protein |
chr5:16359611-16363722 REVERSE LENGTH=810
Length = 810
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 109/163 (66%), Gaps = 8/163 (4%)
Query: 16 MLNTKSLCSMRDPM---WVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYL 72
M + L S + P+ WVAAYF+KKLKK+QV T I S +++ILQ E+D +YRVLAYL
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60
Query: 73 VLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTKRN----AHPETLHTF-VTIPERFEL 127
+LGVVRIYSKKV++L DCNK L KEFV R + P ++ F + +PERFEL
Sbjct: 61 LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLPASIECFSIALPERFEL 120
Query: 128 DAFDLDILEDDGGDHIAPKEKITLKEVLSKTERSVQFSHDKFE 170
DAFDL +LED G ++ P E ITLK+ +TER +S ++F+
Sbjct: 121 DAFDLGVLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFD 163
Score = 96.7 bits (239), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 167/379 (44%), Gaps = 37/379 (9%)
Query: 581 GTTTSDFIPISKRAVRKPGHLSRKRKPVIDKMTVLSDKVLKRSLIDTSDLISNRRQFRPT 640
G T+ F I A ++ +SRKRK +ID ++ +KV+K + D+S L++ RR T
Sbjct: 438 GGTSPQFSIIPTPAAKESSRVSRKRKCLIDDEVIIPNKVMKEMIEDSSKLLAKRRNVPHT 497
Query: 641 LLSKRRESRISSLPDGFNESFFPCFLQQLQSLFSKKMKISD------------------- 681
+RR R ++ F E LQSLF + +K+ +
Sbjct: 498 DCPERRTKRFANPFRSFLEPLIQYGSSDLQSLFCQPIKLKNWATTGTPKDTKIARHKEKS 557
Query: 682 SLEIVEPPERLDVSKSQTVGSPEHIETSLRTPPQGLDPLVTNETPGALDVSGCQTFDNPE 741
SL+ V P + +S QT + E +ET GL N ++++ T
Sbjct: 558 SLDTVRSPGVI-LSSDQTENTQEIMETPQAAALAGLKVTAGNSNVVSVEMGASSTTSGTA 616
Query: 742 H-IATAPQTPPPCQNIQVRSVELPRRTEIQYSDNLGPSSPHANTEKE-QPSNPDANXXXX 799
H A +TP V + E P RT Q + P +P + + E P P
Sbjct: 617 HQTENAAETP---VKPSVIAPETPVRTSEQTV--IAPETPVVSEQVEIAPETPVRESMSK 671
Query: 800 XXXXXXXXXXXXXK-----FNIESSDSYESVEQEQCSTKDDELNLINEEINSCETENSKL 854
+ + E S VE D + + +E++N+ E ++ +
Sbjct: 672 RFFKDPGTCYKKSRPASPFTSFEEHPSVYYVENRDL----DTILMNDEQVNADERQDLQQ 727
Query: 855 EAGWSARTRKFASHLHRVFQDQGKQKEGDDVNFSEVVGGRDRKESARMFYELLVLKTTNY 914
E WS+RTR A L + F +Q +++E + V+ ++ GR +KESAR+FYE LVLKT Y
Sbjct: 728 ET-WSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGRTQKESARLFYETLVLKTKGY 786
Query: 915 VNVKQDKAYEDIAVSKLPK 933
V VKQ+ Y D+ + ++ +
Sbjct: 787 VEVKQNHPYSDVFLMRVSR 805
>AT5G40840.1 | Symbols: SYN2, AtRAD21.1 | Rad21/Rec8-like family
protein | chr5:16359611-16363722 REVERSE LENGTH=809
Length = 809
Score = 159 bits (401), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 109/163 (66%), Gaps = 8/163 (4%)
Query: 16 MLNTKSLCSMRDPM---WVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYL 72
M + L S + P+ WVAAYF+KKLKK+QV T I S +++ILQ E+D +YRVLAYL
Sbjct: 1 MFYSHCLVSRKGPLGAIWVAAYFFKKLKKSQVKATHIPSSVDQILQKELDALTYRVLAYL 60
Query: 73 VLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTKRN----AHPETLHTF-VTIPERFEL 127
+LGVVRIYSKKV++L DCNK L KEFV R + P ++ F + +PERFEL
Sbjct: 61 LLGVVRIYSKKVDFLFDDCNKALIGVKEFVAKERNREKTGVSLPASIECFSIALPERFEL 120
Query: 128 DAFDLDILEDDGGDHIAPKEKITLKEVLSKTERSVQFSHDKFE 170
DAFDL +LED G ++ P E ITLK+ +TER +S ++F+
Sbjct: 121 DAFDLGVLEDFHGGNVKPHEDITLKDGSQETERMDMYSMERFD 163
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 169/378 (44%), Gaps = 36/378 (9%)
Query: 581 GTTTSDFIPISKRAVRKPGHLSRKRKPVIDKMTVLSDKVLKRSLIDTSDLISNRRQFRPT 640
G T+ F I A ++ +SRKRK +ID ++ +KV+K + D+S L++ RR T
Sbjct: 438 GGTSPQFSIIPTPAAKESSRVSRKRKCLIDDEVIIPNKVMKEMIEDSSKLLAKRRNVPHT 497
Query: 641 LLSKRRESRISSLPDGFNESFFPCFLQQLQSLFSKKMKISD------------------- 681
+RR R ++ F E LQSLF + +K+ +
Sbjct: 498 DCPERRTKRFANPFRSFLEPLIQYGSSDLQSLFCQPIKLKNWATTGTPKDTKIARHKEKS 557
Query: 682 SLEIVEPPERLDVSKSQTVGSPEHIETSLRTPPQGLDPLVTNETPGALDVSGCQTFDNPE 741
SL+ V P + +S QT + E +ET GL N ++++ T
Sbjct: 558 SLDTVRSPGVI-LSSDQTENTQEIMETPQAAALAGLKVTAGNSNVVSVEMGASSTTSGTA 616
Query: 742 H-IATAPQTPPPCQNIQVRSVELPRRTEIQYSDNLGPSSPHANTEKE-QPSNPDANXXXX 799
H A +TP V + E P RT Q + P +P + + E P P
Sbjct: 617 HQTENAAETP---VKPSVIAPETPVRTSEQTV--IAPETPVVSEQVEIAPETPVRESMSK 671
Query: 800 XXXXXXXXXXXXXKFNIESSDSYESVEQE----QCSTKDDELNLINEEINSCETENSKLE 855
+ + + S E+ +D + L+N+E+N+ E ++ + E
Sbjct: 672 RFFKDPGTCYKKSR----PASPFTSFEEHPSVYYVENRDLDTILMNDEVNADERQDLQQE 727
Query: 856 AGWSARTRKFASHLHRVFQDQGKQKEGDDVNFSEVVGGRDRKESARMFYELLVLKTTNYV 915
WS+RTR A L + F +Q +++E + V+ ++ GR +KESAR+FYE LVLKT YV
Sbjct: 728 T-WSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGRTQKESARLFYETLVLKTKGYV 786
Query: 916 NVKQDKAYEDIAVSKLPK 933
VKQ+ Y D+ + ++ +
Sbjct: 787 EVKQNHPYSDVFLMRVSR 804
>AT5G16270.1 | Symbols: ATRAD21.3, SYN4 | sister chromatid cohesion
1 protein 4 | chr5:5316783-5322330 FORWARD LENGTH=1031
Length = 1031
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/229 (31%), Positives = 124/229 (54%), Gaps = 17/229 (7%)
Query: 16 MLNTKSLCSMRDPM---WVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYL 72
M ++ + + + P+ W+AA+ +KL+K QV DTDI ++ IL E + + R+ ++L
Sbjct: 1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPI-ALRLSSHL 59
Query: 73 VLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATTKRNAHPETLHTF--VTIPERFELDAF 130
+LGVVRIYS+KV YL DC++ L K K+ + E+ + +T+PE F+LD F
Sbjct: 60 LLGVVRIYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDF 119
Query: 131 DL---DILEDDGGD-HIAPKEKITLKEVLSKTERSV-QFSHD-KFEDFDXXXXXXXAHNS 184
+L +I + + D H++ KE+ITL++ + S QF D +F D D +
Sbjct: 120 ELPDNEIFQGNYVDHHVSTKEQITLQDTMDGVVYSTSQFGLDERFGDGDTSQAALDLDEA 179
Query: 185 LVEHFHRLMMGMDFEDSPP-DSSINLVAGEEQLENSL--FSRKEPMNFD 230
+ + + ++G D E P D + L A +++S+ S PM+F+
Sbjct: 180 VFQ--DKDVIGSDDEGVPGIDHNAYLDAAAPGIKDSMEGVSEAMPMDFN 226
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 54/84 (64%), Gaps = 3/84 (3%)
Query: 856 AGWSARTRKFASHLHRVFQDQGKQKEGDDVNFSE-VVGGRDRKESARMFYELLVLKTTNY 914
+GWS+RTR A +L +F + + G +V ++ ++ G+ RKE++RMF+E LVLKT +Y
Sbjct: 949 SGWSSRTRAVAKYLQTLFDKETEN--GKNVLVADKLLAGKTRKEASRMFFETLVLKTRDY 1006
Query: 915 VNVKQDKAYEDIAVSKLPKFDQTF 938
+ V+Q K YE I + PK ++
Sbjct: 1007 IQVEQGKPYESIIIKPRPKLTKSI 1030
>AT5G40840.3 | Symbols: SYN2 | Rad21/Rec8-like family protein |
chr5:16359611-16362823 REVERSE LENGTH=678
Length = 678
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 103/379 (27%), Positives = 167/379 (44%), Gaps = 37/379 (9%)
Query: 581 GTTTSDFIPISKRAVRKPGHLSRKRKPVIDKMTVLSDKVLKRSLIDTSDLISNRRQFRPT 640
G T+ F I A ++ +SRKRK +ID ++ +KV+K + D+S L++ RR T
Sbjct: 306 GGTSPQFSIIPTPAAKESSRVSRKRKCLIDDEVIIPNKVMKEMIEDSSKLLAKRRNVPHT 365
Query: 641 LLSKRRESRISSLPDGFNESFFPCFLQQLQSLFSKKMKISD------------------- 681
+RR R ++ F E LQSLF + +K+ +
Sbjct: 366 DCPERRTKRFANPFRSFLEPLIQYGSSDLQSLFCQPIKLKNWATTGTPKDTKIARHKEKS 425
Query: 682 SLEIVEPPERLDVSKSQTVGSPEHIETSLRTPPQGLDPLVTNETPGALDVSGCQTFDNPE 741
SL+ V P + +S QT + E +ET GL N ++++ T
Sbjct: 426 SLDTVRSPGVI-LSSDQTENTQEIMETPQAAALAGLKVTAGNSNVVSVEMGASSTTSGTA 484
Query: 742 H-IATAPQTPPPCQNIQVRSVELPRRTEIQYSDNLGPSSPHANTEKE-QPSNPDANXXXX 799
H A +TP V + E P RT Q + P +P + + E P P
Sbjct: 485 HQTENAAETP---VKPSVIAPETPVRTSEQTV--IAPETPVVSEQVEIAPETPVRESMSK 539
Query: 800 XXXXXXXXXXXXXK-----FNIESSDSYESVEQEQCSTKDDELNLINEEINSCETENSKL 854
+ + E S VE D + + +E++N+ E ++ +
Sbjct: 540 RFFKDPGTCYKKSRPASPFTSFEEHPSVYYVENRDL----DTILMNDEQVNADERQDLQQ 595
Query: 855 EAGWSARTRKFASHLHRVFQDQGKQKEGDDVNFSEVVGGRDRKESARMFYELLVLKTTNY 914
E WS+RTR A L + F +Q +++E + V+ ++ GR +KESAR+FYE LVLKT Y
Sbjct: 596 ET-WSSRTRNVAKFLEKTFLEQREREEEEKVSLLQLCRGRTQKESARLFYETLVLKTKGY 654
Query: 915 VNVKQDKAYEDIAVSKLPK 933
V VKQ+ Y D+ + ++ +
Sbjct: 655 VEVKQNHPYSDVFLMRVSR 673
>AT3G59550.1 | Symbols: SYN3, ATRAD21.2, ATSYN3 | Rad21/Rec8-like
family protein | chr3:21997262-22000496 FORWARD
LENGTH=693
Length = 693
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 49/149 (32%), Positives = 85/149 (57%), Gaps = 16/149 (10%)
Query: 16 MLNTKSLCSMRDPM---WVAAYFYKKLKKAQVVDTDISSCIEKILQGEMDVTSYRVLAYL 72
M + +L + + P+ W AA+ +++LKK+Q +I ++ I+ E+ + + R ++L
Sbjct: 1 MFYSHTLLARKGPLGTVWCAAHVHQRLKKSQYTSINIPDTVDNIMFPEVPL-ALRTSSHL 59
Query: 73 VLGVVRIYSKKVEYLLHDCNKVLSKFKEFVIATT------KRNAHPETLHTFVTIPERFE 126
++GVVRIYSKKV+YL +D N + + + ++T R A PE+ VT+P+
Sbjct: 60 LVGVVRIYSKKVDYLYNDWNLLNTWVAKAFVSTQVNLPEDARQAPPES----VTLPQALN 115
Query: 127 LDAFDL--DILEDDGGDHIAPKEKITLKE 153
LD FDL D L+ + +H +E ITL +
Sbjct: 116 LDEFDLEDDTLDMEFDNHTRSEEDITLTD 144
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 3/104 (2%)
Query: 834 DDELNLINEEINS-CETENSKLEAGWSARTRKFASHLHR--VFQDQGKQKEGDDVNFSEV 890
D+EL + NS T S+ A + R R A +L + D++ SE+
Sbjct: 584 DEELYFLEVGGNSPVGTPASQDSAALTGRARALAQYLKQRSSSSPTTSSHPSGDLSLSEI 643
Query: 891 VGGRDRKESARMFYELLVLKTTNYVNVKQDKAYEDIAVSKLPKF 934
+ G+ RK +ARMF+E LVLK+ ++++QD+ Y DIA+ +P
Sbjct: 644 LAGKTRKLAARMFFETLVLKSRGLIDMQQDRPYGDIALKLMPAL 687