Miyakogusa Predicted Gene

Lj1g3v3832560.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3832560.1 CUFF.31190.1
         (237 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G24330.1 | Symbols: ATXR6, SDG34 | ARABIDOPSIS TRITHORAX-RELA...   222   1e-58
AT5G09790.2 | Symbols: ATXR5, SDG15 | ARABIDOPSIS TRITHORAX-RELA...   184   6e-47
AT5G09790.1 | Symbols: ATXR5, SDG15 | ARABIDOPSIS TRITHORAX-RELA...   163   1e-40
AT3G01460.1 | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain ...    54   8e-08
AT1G77250.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family ...    49   3e-06

>AT5G24330.1 | Symbols: ATXR6, SDG34 | ARABIDOPSIS TRITHORAX-RELATED
           PROTEIN 6 | chr5:8295245-8296997 REVERSE LENGTH=349
          Length = 349

 Score =  222 bits (566), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 117/196 (59%), Positives = 133/196 (67%), Gaps = 3/196 (1%)

Query: 31  VVCIECGSGEYPAELLLCDKCDRGCHLFCHRPILVSVPKGSWFCPSCS-HDKPKSFPLVQ 89
            VC EC SG+ PA+LLLCDKCD+G HLFC RPILVSVPKGSWFCPSCS H  PKSFPL+Q
Sbjct: 33  TVCEECSSGKQPAKLLLCDKCDKGFHLFCLRPILVSVPKGSWFCPSCSKHQIPKSFPLIQ 92

Query: 90  TKIIDFFRIQRSQDAPAVSNQDXXXXXXXXXXXXXXXXXXXX--PFVPSEDPQRRLEQMA 147
           TKIIDFFRI+RS D+  +S+                        P+ PS DPQRRLEQMA
Sbjct: 93  TKIIDFFRIKRSPDSSQISSSSDSIGKKRKKTSLVMSKKKRRLLPYNPSNDPQRRLEQMA 152

Query: 148 SXXXXXXXXKAEFSNELSYMPGMAPRSANCADLEHGGMQVMSKEDSETLNLCKSMTERGE 207
           S          +FSNEL+Y+ G APRSAN A  E GGMQV+SKE  ETL LCK M + GE
Sbjct: 153 SLATALRASNTKFSNELTYVSGKAPRSANQAAFEKGGMQVLSKEGVETLALCKKMMDLGE 212

Query: 208 WPPLMVVFDPVEGYVL 223
            PPLMVVFDP EG+ +
Sbjct: 213 CPPLMVVFDPYEGFTV 228


>AT5G09790.2 | Symbols: ATXR5, SDG15 | ARABIDOPSIS TRITHORAX-RELATED
           PROTEIN 5 | chr5:3039204-3040970 REVERSE LENGTH=379
          Length = 379

 Score =  184 bits (466), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 119/196 (60%), Gaps = 4/196 (2%)

Query: 31  VVCIECGSGEYPAELLLCDKCDRGCHLFCHRPILVSVPKGSWFCPSCSHDKPKSFPLVQT 90
           V C +CGSGE   ELLLCDKCDRG H+ C RPI+V VP G+W C  CS  +P    L Q 
Sbjct: 65  VTCEKCGSGEGDDELLLCDKCDRGFHMKCLRPIVVRVPIGTWLCVDCSDQRPVRR-LSQK 123

Query: 91  KIIDFFRIQR---SQDAPAVSNQDXXXXXXXXXXXXXXXXXXXXPFVPSEDPQRRLEQMA 147
           KI+ FFRI++     D   +S ++                    P VPSEDP +RL QM 
Sbjct: 124 KILHFFRIEKHTHQTDKLELSQEETRKRRRSCSLTVKKRRRKLLPLVPSEDPDQRLAQMG 183

Query: 148 SXXXXXXXXKAEFSNELSYMPGMAPRSANCADLEHGGMQVMSKEDSETLNLCKSMTERGE 207
           +          ++S+ L+Y+PGMAPRSAN + LE GGMQV+ KED ETL  C+SM  RGE
Sbjct: 184 TLASALTALGIKYSDGLNYVPGMAPRSANQSKLEKGGMQVLCKEDLETLEQCQSMYRRGE 243

Query: 208 WPPLMVVFDPVEGYVL 223
            PPL+VVFDP+EGY +
Sbjct: 244 CPPLVVVFDPLEGYTV 259


>AT5G09790.1 | Symbols: ATXR5, SDG15 | ARABIDOPSIS TRITHORAX-RELATED
           PROTEIN 5 | chr5:3039204-3040970 REVERSE LENGTH=352
          Length = 352

 Score =  163 bits (412), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/193 (45%), Positives = 110/193 (56%), Gaps = 25/193 (12%)

Query: 31  VVCIECGSGEYPAELLLCDKCDRGCHLFCHRPILVSVPKGSWFCPSCSHDKPKSFPLVQT 90
           V C +CGSGE   ELLLCDKCDRG H+ C RPI+V VP G+W C  CS  +P        
Sbjct: 65  VTCEKCGSGEGDDELLLCDKCDRGFHMKCLRPIVVRVPIGTWLCVDCSDQRP-------- 116

Query: 91  KIIDFFRIQRSQDAPAVSNQDXXXXXXXXXXXXXXXXXXXXPFVPSEDPQRRLEQMASXX 150
            +    R +R   +  V  +                     P VPSEDP +RL QM +  
Sbjct: 117 -VRKETRKRRRSCSLTVKKR----------------RRKLLPLVPSEDPDQRLAQMGTLA 159

Query: 151 XXXXXXKAEFSNELSYMPGMAPRSANCADLEHGGMQVMSKEDSETLNLCKSMTERGEWPP 210
                   ++S+ L+Y+PGMAPRSAN + LE GGMQV+ KED ETL  C+SM  RGE PP
Sbjct: 160 SALTALGIKYSDGLNYVPGMAPRSANQSKLEKGGMQVLCKEDLETLEQCQSMYRRGECPP 219

Query: 211 LMVVFDPVEGYVL 223
           L+VVFDP+EGY +
Sbjct: 220 LVVVFDPLEGYTV 232


>AT3G01460.1 | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 |
            chr3:173316-182038 FORWARD LENGTH=2176
          Length = 2176

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 32   VCIECGSGEYPAELLLCDKCDRGCHLFCHRPILVSVPKGSWFCPSC 77
            VC  CG  +    +LLCD CD   H +C  P L+ +P G+W+CPSC
Sbjct: 1289 VCKVCGVDKDDDSVLLCDTCDAEYHTYCLNPPLIRIPDGNWYCPSC 1334


>AT1G77250.1 | Symbols:  | RING/FYVE/PHD-type zinc finger family
           protein | chr1:29020444-29022938 REVERSE LENGTH=522
          Length = 522

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 32  VCIECGSGEYPAELLLCDKCDRGCHLFCHRPILVSVPKGSWFCPSC 77
           +C  C + +   +++LCD CD   H++C RP   SVP G WFC +C
Sbjct: 404 LCRNCLTDKDDDKIVLCDGCDDAYHIYCMRPPCESVPNGEWFCTAC 449