Miyakogusa Predicted Gene

Lj1g3v3789400.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3789400.1 Non Chatacterized Hit- tr|K3ZNZ7|K3ZNZ7_SETIT
Uncharacterized protein (Fragment) OS=Setaria italica
,54.65,2e-19,seg,NULL,CUFF.31181.1
         (123 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G08330.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   127   2e-30
AT4G08330.2 | Symbols:  | unknown protein. | chr4:5255384-525652...   108   8e-25

>AT4G08330.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: plasma membrane;
           EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14
           growth stages; BEST Arabidopsis thaliana protein match
           is: unknown protein (TAIR:AT2G17705.1); Has 98 Blast
           hits to 98 proteins in 13 species: Archae - 0; Bacteria
           - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0;
           Other Eukaryotes - 0 (source: NCBI BLink). |
           chr4:5255384-5256525 REVERSE LENGTH=164
          Length = 164

 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/99 (58%), Positives = 70/99 (70%)

Query: 25  RDVRYSCGNCGYELXXXXXXXXXXXXXXKYGKSIRRGIISFFNIDDSRFTRVDELQCVPH 84
           R V YSCG+CGYEL              KYGKS++ GIISFFNID+ RF++VDE QC+PH
Sbjct: 34  RHVNYSCGSCGYELNLSSTNRITSTIGSKYGKSMKSGIISFFNIDEGRFSQVDEFQCMPH 93

Query: 85  FSKHSWGLFRRRTKLLCRKCGNHIGNAHNGYTSSFPLVS 123
           FS++SWGLFR RTKLLCRKC N+IGNA       + LV+
Sbjct: 94  FSRYSWGLFRHRTKLLCRKCNNYIGNASQEKAPEYALVT 132


>AT4G08330.2 | Symbols:  | unknown protein. | chr4:5255384-5256525
           REVERSE LENGTH=153
          Length = 153

 Score =  108 bits (270), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 47/71 (66%), Positives = 58/71 (81%)

Query: 53  KYGKSIRRGIISFFNIDDSRFTRVDELQCVPHFSKHSWGLFRRRTKLLCRKCGNHIGNAH 112
           KYGKS++ GIISFFNID+ RF++VDE QC+PHFS++SWGLFR RTKLLCRKC N+IGNA 
Sbjct: 51  KYGKSMKSGIISFFNIDEGRFSQVDEFQCMPHFSRYSWGLFRHRTKLLCRKCNNYIGNAS 110

Query: 113 NGYTSSFPLVS 123
                 + LV+
Sbjct: 111 QEKAPEYALVT 121