Miyakogusa Predicted Gene

Lj1g3v3754960.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3754960.1 tr|B9NHA2|B9NHA2_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_584780 PE=4
SV=1,37.5,0.000000000000005,UBX-RELATED,NULL; UBX,UBX; seg,NULL;
Ubiquitin-like,NULL; no description,NULL,CUFF.31152.1
         (262 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27310.1 | Symbols: PUX1 | plant UBX domain-containing protei...   203   9e-53

>AT3G27310.1 | Symbols: PUX1 | plant UBX domain-containing protein 1
           | chr3:10087360-10089077 REVERSE LENGTH=251
          Length = 251

 Score =  203 bits (517), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 120/254 (47%), Positives = 152/254 (59%), Gaps = 17/254 (6%)

Query: 12  KRRRLTNTYSSAMDSEAAKAKLAAMTERYGREFHVFETSTFXXXXXXXXXXXXQLNVEEE 71
           KRRRL  T  S   S +A+AK+A M E+ GRE  VFETS+             Q++  ++
Sbjct: 12  KRRRLEIT-DSMEASSSAQAKIADMREKLGREVRVFETSSISQRPS-------QVSSADD 63

Query: 72  ETDDL-EFSPEDYIRISSIKKPEPILKTRKMXXXXXXXXKSKMTRAVIRVRFPDNHTLEA 130
           E+DD  EF+P D+ R+ + KK +  LKTRK+        +SK+T+AVIRVRFPDNHTLEA
Sbjct: 64  ESDDFYEFTPADFYRLLATKKEDKSLKTRKIREAEEAARRSKLTKAVIRVRFPDNHTLEA 123

Query: 131 TFDPSETIQTLIDLLIKVIAQPEQPFYIYTVPPKKLITNMSQDFYAAGFCPGALVNFSYD 190
           TF PSE IQ LIDL+ +V+A P+ PFY+YT PPKK I + SQDFY+AGF PGA+V FS D
Sbjct: 124 TFHPSEKIQGLIDLVKRVVAHPDVPFYLYTTPPKKQIKDFSQDFYSAGFVPGAIVYFSND 183

Query: 191 VSK--GGSAVDLNSPYLREEILSLKGSDAANDQGQQSELVQSXXXXXXXXXXXXXXXXXX 248
             K  GGS+    +PYL EEILSLK  +A     +  E   S                  
Sbjct: 184 QPKDDGGSS----TPYLNEEILSLKDLEAMTKAVEPVE--SSSEPATVDSSAVPVEHERK 237

Query: 249 XAQKKLVKPKWLKM 262
             +KK  KPKW KM
Sbjct: 238 STEKKTTKPKWFKM 251