Miyakogusa Predicted Gene
- Lj1g3v3751710.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3751710.1 Non Chatacterized Hit- tr|F6GX63|F6GX63_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,84,8e-17,seg,NULL; Fer2_3,Succinate dehydogenase/fumarate
reductase N-terminal; Fer4_8,4Fe-4S ferredoxin-type,CUFF.31148.1
(278 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G40650.1 | Symbols: SDH2-2 | succinate dehydrogenase 2-2 | ch... 437 e-123
AT3G27380.2 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 | ch... 431 e-121
AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 | ch... 431 e-121
AT5G65165.1 | Symbols: SDH2-3 | succinate dehydrogenase 2-3 | ch... 317 4e-87
>AT5G40650.1 | Symbols: SDH2-2 | succinate dehydrogenase 2-2 |
chr5:16281462-16283296 FORWARD LENGTH=280
Length = 280
Score = 437 bits (1123), Expect = e-123, Method: Compositional matrix adjust.
Identities = 204/251 (81%), Positives = 221/251 (88%)
Query: 25 RAHASETQAQQVEPKASETTRMKKFQIYRWNPENPTKPELKEYTINLKDCGPMVLDALIK 84
R ++ ++AQ +K FQIYRWNP+NP KPEL++Y I+LKDCGPMVLDALIK
Sbjct: 27 RWTSTGSEAQSKASTGGGGASLKTFQIYRWNPDNPGKPELQDYKIDLKDCGPMVLDALIK 86
Query: 85 IKNEVDQTLTFRRSCREGICGSCAMNIDGCNGLACLTEIPSEAKETTVTPLPHMFVIKDL 144
IKNE+D +LTFRRSCREGICGSCAMNIDGCNGLACLT+I S +KETT+TPLPHMFVIKDL
Sbjct: 87 IKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIESGSKETTITPLPHMFVIKDL 146
Query: 145 VVDMTNFYQQYKSIEPWLKRKSPPPVPGKEILQSKKDREKLDGMYECILCACCSTSCPSY 204
VVDMTNFY QYKSIEPWLKRK+P VPGKEILQSKKDR KLDGMYECILCACCSTSCPSY
Sbjct: 147 VVDMTNFYNQYKSIEPWLKRKNPASVPGKEILQSKKDRAKLDGMYECILCACCSTSCPSY 206
Query: 205 WWNPESYLGPAALLHANRWISDSRDEYTKERLEAINDEFKLYRCHSILNCADACPKLLNP 264
WWNPESYLGPAALLHANRWISDSRDEYTKERLEAI+DEFKLYRCH+ILNCA ACPK LNP
Sbjct: 207 WWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNP 266
Query: 265 GKQIQQIKSAQ 275
GKQI IK Q
Sbjct: 267 GKQITHIKQLQ 277
>AT3G27380.2 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 |
chr3:10131209-10132673 REVERSE LENGTH=279
Length = 279
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/247 (82%), Positives = 218/247 (88%), Gaps = 3/247 (1%)
Query: 29 SETQAQQVEPKASETTRMKKFQIYRWNPENPTKPELKEYTINLKDCGPMVLDALIKIKNE 88
+ET+A + S +K FQIYRWNP+NP KPEL+ Y I+LKDCGPMVLDALIKIKNE
Sbjct: 35 AETKASSGGGRGSN---LKTFQIYRWNPDNPGKPELQNYQIDLKDCGPMVLDALIKIKNE 91
Query: 89 VDQTLTFRRSCREGICGSCAMNIDGCNGLACLTEIPSEAKETTVTPLPHMFVIKDLVVDM 148
+D +LTFRRSCREGICGSCAMNIDGCNGLACLT+I EA ETT+TPLPHMFVIKDLVVDM
Sbjct: 92 MDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIQDEASETTITPLPHMFVIKDLVVDM 151
Query: 149 TNFYQQYKSIEPWLKRKSPPPVPGKEILQSKKDREKLDGMYECILCACCSTSCPSYWWNP 208
TNFY QYKSIEPWLKRK+P VP KEILQSKKDR KLDGMYECILCACCSTSCPSYWWNP
Sbjct: 152 TNFYNQYKSIEPWLKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNP 211
Query: 209 ESYLGPAALLHANRWISDSRDEYTKERLEAINDEFKLYRCHSILNCADACPKLLNPGKQI 268
ESYLGPAALLHANRWISDSRDEYTKERLEAI+DEFKLYRCH+ILNCA ACPK LNPGKQI
Sbjct: 212 ESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQI 271
Query: 269 QQIKSAQ 275
IK Q
Sbjct: 272 THIKQLQ 278
>AT3G27380.1 | Symbols: SDH2-1 | succinate dehydrogenase 2-1 |
chr3:10131209-10132673 REVERSE LENGTH=279
Length = 279
Score = 431 bits (1109), Expect = e-121, Method: Compositional matrix adjust.
Identities = 204/247 (82%), Positives = 218/247 (88%), Gaps = 3/247 (1%)
Query: 29 SETQAQQVEPKASETTRMKKFQIYRWNPENPTKPELKEYTINLKDCGPMVLDALIKIKNE 88
+ET+A + S +K FQIYRWNP+NP KPEL+ Y I+LKDCGPMVLDALIKIKNE
Sbjct: 35 AETKASSGGGRGSN---LKTFQIYRWNPDNPGKPELQNYQIDLKDCGPMVLDALIKIKNE 91
Query: 89 VDQTLTFRRSCREGICGSCAMNIDGCNGLACLTEIPSEAKETTVTPLPHMFVIKDLVVDM 148
+D +LTFRRSCREGICGSCAMNIDGCNGLACLT+I EA ETT+TPLPHMFVIKDLVVDM
Sbjct: 92 MDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIQDEASETTITPLPHMFVIKDLVVDM 151
Query: 149 TNFYQQYKSIEPWLKRKSPPPVPGKEILQSKKDREKLDGMYECILCACCSTSCPSYWWNP 208
TNFY QYKSIEPWLKRK+P VP KEILQSKKDR KLDGMYECILCACCSTSCPSYWWNP
Sbjct: 152 TNFYNQYKSIEPWLKRKTPASVPAKEILQSKKDRAKLDGMYECILCACCSTSCPSYWWNP 211
Query: 209 ESYLGPAALLHANRWISDSRDEYTKERLEAINDEFKLYRCHSILNCADACPKLLNPGKQI 268
ESYLGPAALLHANRWISDSRDEYTKERLEAI+DEFKLYRCH+ILNCA ACPK LNPGKQI
Sbjct: 212 ESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARACPKGLNPGKQI 271
Query: 269 QQIKSAQ 275
IK Q
Sbjct: 272 THIKQLQ 278
>AT5G65165.1 | Symbols: SDH2-3 | succinate dehydrogenase 2-3 |
chr5:26034515-26035922 REVERSE LENGTH=309
Length = 309
Score = 317 bits (813), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 152/230 (66%), Positives = 184/230 (80%), Gaps = 4/230 (1%)
Query: 47 KKFQIYRWNPENP-TKPELKEYTINLKDCGPMVLDALIKIKNEVDQTLTFRRSCREGICG 105
K+F+IYRWNP+ P +KP L+ + ++L CGPMVLD L KIK E D +L++RRSCREGICG
Sbjct: 67 KEFKIYRWNPDKPNSKPFLQSFFVDLSSCGPMVLDVLQKIKAEDDASLSYRRSCREGICG 126
Query: 106 SCAMNIDGCNGLACLTEI-PSEAKETTVTPLPHMFVIKDLVVDMTNFYQQYKSIEPWLKR 164
SC+MNIDG N +ACL I P+ +K T +TPLPHM+VIKDLVVD+TNFYQQYKS+EPWLK
Sbjct: 127 SCSMNIDGTNTVACLKPINPNTSKPTIITPLPHMYVIKDLVVDLTNFYQQYKSMEPWLKT 186
Query: 165 KSPPPVPGKEILQSKKDREKLDGMYECILCACCSTSCPSYWWNPESYLGPAALLHANRWI 224
+ PP G+E QS KDR+KLDG+YECILCACC+TSCPSYWWNPE + GPAALL A RWI
Sbjct: 187 RKPPK-DGREHRQSPKDRKKLDGLYECILCACCTTSCPSYWWNPEEFPGPAALLQAYRWI 245
Query: 225 SDSRDEYTKERLEAIND-EFKLYRCHSILNCADACPKLLNPGKQIQQIKS 273
SDSRDEY +ERL+AI + E K+YRC +I NC CPK LNP I ++KS
Sbjct: 246 SDSRDEYREERLQAITESETKVYRCRAIKNCTATCPKGLNPASAILKMKS 295