Miyakogusa Predicted Gene
- Lj1g3v3740540.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3740540.2 Non Chatacterized Hit- tr|K3YMG1|K3YMG1_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si015440,67.74,0.025,seg,NULL; FAMILY NOT NAMED,NULL,CUFF.31134.2
(259 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G27390.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 327 5e-90
AT5G40640.1 | Symbols: | unknown protein; LOCATED IN: plasma me... 302 1e-82
AT4G12680.1 | Symbols: | unknown protein; INVOLVED IN: vegetati... 244 5e-65
AT4G37030.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 179 1e-45
>AT3G27390.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: plasma membrane;
EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13
growth stages; BEST Arabidopsis thaliana protein match
is: unknown protein (TAIR:AT5G40640.1); Has 101 Blast
hits to 99 proteins in 12 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr3:10133372-10136111 REVERSE LENGTH=588
Length = 588
Score = 327 bits (838), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 160/259 (61%), Positives = 195/259 (75%), Gaps = 2/259 (0%)
Query: 1 MEPPTGFCASLSSXXXXXXXXXXXXXXXXXXXXXFFPLTCLIITIGNSAIILGLWPAHVV 60
MEPP GF ASL PL CL++TIGNSA+IL L P H+V
Sbjct: 1 MEPPIGFRASLFQFLLFLPYFIGLLFLGFIKGIVLCPLVCLVVTIGNSAVILSLLPVHIV 60
Query: 61 WTYYCVVRAKHIGPFLKLIICTCVLPVLLISWPLGGILGSIVGGAALGYLSPIFATFEAV 120
WT+Y +V AK +GP LK+ +C C LP +I WP+ GILGS++GGA G+ SPIFATF+AV
Sbjct: 61 WTFYSIVSAKQVGPILKIFLCLC-LPAAIILWPIVGILGSVLGGALYGFFSPIFATFDAV 119
Query: 121 EEGKDDKLFHCFIDGTWSTLERSCMVVRDVRDVCFYSYFSVMDDLREKGPPNRKYYEIRL 180
EGK + FHCF DGTWST++RS VVRD +DVCF+SYFS+MD+L++ P +RKYYEIRL
Sbjct: 120 GEGKPYQFFHCFYDGTWSTMQRSFTVVRDFKDVCFHSYFSLMDELKQSCP-DRKYYEIRL 178
Query: 181 HYLPGALMATVIGIIVDVPVISFIALCKGPYMLFKGWHRLFHDLIGSEGPFLETICVPLA 240
LPGAL+ +V+GI+VD PVIS +A+CK PYMLFKGWHRLFHDLIG EGPFLET+CVP+A
Sbjct: 179 LQLPGALVVSVLGILVDPPVISLVAICKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIA 238
Query: 241 GLAILLWPLAVTGAVLASM 259
GLAILLWPLAVTGAV+ S+
Sbjct: 239 GLAILLWPLAVTGAVIGSV 257
>AT5G40640.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 19 plant structures; EXPRESSED
DURING: 7 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G27390.1);
Has 104 Blast hits to 102 proteins in 14 species: Archae
- 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 101;
Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
| chr5:16277345-16280258 FORWARD LENGTH=586
Length = 586
Score = 302 bits (774), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 155/259 (59%), Positives = 182/259 (70%), Gaps = 2/259 (0%)
Query: 1 MEPPTGFCASLSSXXXXXXXXXXXXXXXXXXXXXFFPLTCLIITIGNSAIILGLWPAHVV 60
MEPPTG ASL PL CL + IGNSAIILGL P H +
Sbjct: 1 MEPPTGILASLWQFILFIPYFTGLLLLGVIKGIVLCPLICLTVAIGNSAIILGLLPVHAI 60
Query: 61 WTYYCVVRAKHIGPFLKLIICTCVLPVLLISWPLGGILGSIVGGAALGYLSPIFATFEAV 120
WT Y + AK +GP LK+ +C CV P+ +I W + ILGS++GGA G+LSPIFATF+AV
Sbjct: 61 WTLYSIASAKQLGPILKIFLCLCV-PLGVILWLVVSILGSVLGGAIYGFLSPIFATFDAV 119
Query: 121 EEGKDDKLFHCFIDGTWSTLERSCMVVRDVRDVCFYSYFSVMDDLREKGPPNRKYYEIRL 180
EGK + FHCF DGTWST++ S VV D +DVCF+SYFS MDDLR NR YYEIRL
Sbjct: 120 GEGKSNPFFHCFYDGTWSTVQGSFTVVCDFKDVCFHSYFSFMDDLR-TSTANRHYYEIRL 178
Query: 181 HYLPGALMATVIGIIVDVPVISFIALCKGPYMLFKGWHRLFHDLIGSEGPFLETICVPLA 240
+PGA++ V+GI+VD PVIS +ALCK PYMLFKGWHRLFHDLIG EGPFLET+CVP+A
Sbjct: 179 LQIPGAVIVAVLGILVDFPVISLLALCKSPYMLFKGWHRLFHDLIGREGPFLETMCVPIA 238
Query: 241 GLAILLWPLAVTGAVLASM 259
GL ILLWPLAV GAVL S+
Sbjct: 239 GLVILLWPLAVVGAVLGSV 257
>AT4G12680.1 | Symbols: | unknown protein; INVOLVED IN: vegetative
to reproductive phase transition of meristem; LOCATED
IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G40640.1);
Has 103 Blast hits to 103 proteins in 14 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 103;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr4:7475104-7478174 FORWARD LENGTH=575
Length = 575
Score = 244 bits (622), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 128/259 (49%), Positives = 168/259 (64%), Gaps = 1/259 (0%)
Query: 1 MEPPTGFCASLSSXXXXXXXXXXXXXXXXXXXXXFFPLTCLIITIGNSAIILGLWPAHVV 60
ME P GF L S P++ II +GNS +I+GLWPAH +
Sbjct: 1 MEVPKGFFEKLWSFVSFLPYFFLLLLLGVTKALIIGPISSAIILVGNSCVIIGLWPAHFI 60
Query: 61 WTYYCVVRAKHIGPFLKLIICTCVLPVLLISWPLGGILGSIVGGAALGYLSPIFATFEAV 120
WTYYC+ R K IG LK + LL+ P+ GI+GS+ GG A G+ +P+ ATFEAV
Sbjct: 61 WTYYCLARTKRIGLVLKTLALVLFPLPLLLW-PVAGIVGSLFGGIAYGFFTPLMATFEAV 119
Query: 121 EEGKDDKLFHCFIDGTWSTLERSCMVVRDVRDVCFYSYFSVMDDLREKGPPNRKYYEIRL 180
E K +HCF+DG++ST++ SC VV D D CF+SYFS MD+LRE + + EI+L
Sbjct: 120 GESVTSKCYHCFVDGSFSTIKGSCTVVTDFTDFCFHSYFSYMDELREMVSADVEPLEIKL 179
Query: 181 HYLPGALMATVIGIIVDVPVISFIALCKGPYMLFKGWHRLFHDLIGSEGPFLETICVPLA 240
LP L+A++IG++VDV +I+ +A+ K PYML KGW RL DL+G EGPFLE++CVP A
Sbjct: 180 SRLPSCLLASLIGVMVDVLLITAVAVYKSPYMLLKGWKRLLEDLVGREGPFLESVCVPFA 239
Query: 241 GLAILLWPLAVTGAVLASM 259
GLAILLWPLAV GAV+AS+
Sbjct: 240 GLAILLWPLAVAGAVIASV 258
>AT4G37030.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT4G12680.1); Has 101 Blast hits
to 99 proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr4:17452150-17454629 FORWARD LENGTH=569
Length = 569
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/224 (39%), Positives = 139/224 (62%), Gaps = 3/224 (1%)
Query: 37 PLTCLIITIGNSAIILGLWPAHVVWTYYCVVRAKHIGPFLKLIICTCVLPVLLISWPLGG 96
P+ L + +GN +IL L+PAHV WT Y V + LK+ I LP L W
Sbjct: 37 PIAGLTLIVGNVGVILCLFPAHVTWTIYAVAKTNRFDIPLKVAILVA-LPALFGIWLGLS 95
Query: 97 ILGSIVGGAALGYLSPIFATFEAV-EEGKDDKLFHCFIDGTWSTLERSCMVVRDVRDVCF 155
+ S++ G G+ +P + FEA ++ + +K FHC +DGTW T++ SC+VV D D C+
Sbjct: 96 LAISVLVGVGYGFFTPWISAFEAFRQDTESNKFFHCLVDGTWGTIKGSCIVVTDFADFCY 155
Query: 156 YSYFSVMDDLREKGPPNRKYYEIRLHYLPGALMATVIGIIVDVPVISFIALCKGPYMLFK 215
+SY + +LRE P + + +RL ++PG ++ ++G+++D+P+ + IA+ K PY+L K
Sbjct: 156 HSYPLYLKELRES-PVSDELQTLRLIHVPGCIIVGILGLVIDIPLFTAIAVIKSPYLLLK 214
Query: 216 GWHRLFHDLIGSEGPFLETICVPLAGLAILLWPLAVTGAVLASM 259
GW+RL D I EGPFLE C+P+AGL +LLWP+ V G +L ++
Sbjct: 215 GWYRLAQDAINREGPFLEIACIPVAGLTVLLWPIVVIGFILVTI 258