Miyakogusa Predicted Gene

Lj1g3v3730400.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3730400.2 Non Chatacterized Hit- tr|I1IYY6|I1IYY6_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,37.76,2e-19,Peptidase_M76,Peptidase M76, ATP23; SUBFAMILY NOT
NAMED,NULL; KUB3-PROV PROTEIN,NULL,CUFF.31128.2
         (169 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03420.1 | Symbols:  | Ku70-binding family protein | chr3:812...   187   2e-48

>AT3G03420.1 | Symbols:  | Ku70-binding family protein |
           chr3:812527-813644 FORWARD LENGTH=194
          Length = 194

 Score =  187 bits (476), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 86/131 (65%), Positives = 103/131 (78%)

Query: 15  GTTLKECQRMIHKSLQSPTVKSLREHMDKAGCPVRDNFFMAVNCNQGTAGGYIQGEGIVV 74
           G ++ ECQ MI +S ++P VK L E M+K+GC V DNF  AV C    AGGY +G GI V
Sbjct: 20  GKSIDECQDMIRRSFRNPIVKFLMEQMEKSGCRVGDNFVKAVVCTGPVAGGYTKGRGITV 79

Query: 75  CSDQIGSQDEVNQVIMHELIHAFDDCRAANLDWLNCAHHACSEIRANHLSGDCHYKRELL 134
           CS+ +  QDEVNQV++HELIHA+D+CRA NLDW NCAHHACSEIRA HLSGDCH+KRELL
Sbjct: 80  CSNYLTIQDEVNQVVIHELIHAYDECRAKNLDWTNCAHHACSEIRAGHLSGDCHFKRELL 139

Query: 135 RGFWKVKGHEQ 145
           RGF K++GHEQ
Sbjct: 140 RGFIKLRGHEQ 150