Miyakogusa Predicted Gene
- Lj1g3v3717020.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3717020.1 tr|G7K6I5|G7K6I5_MEDTR GTP pyrophosphokinase
OS=Medicago truncatula GN=MTR_5g007870 PE=4
SV=1,78.86,0,HD-domain/PDEase-like,NULL; Nucleotidyltransferase,NULL;
Metal dependent phosphohydrolases with
cons,NODE_45095_length_2143_cov_41.708351.path2.1
(662 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G54130.1 | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog... 167 2e-41
AT3G14050.1 | Symbols: RSH2, AT-RSH2, ATRSH2 | RELA/SPOT homolog... 160 3e-39
AT4G02260.3 | Symbols: RSH1, AT-RSH1 | RELA/SPOT homolog 1 | chr... 135 1e-31
AT4G02260.2 | Symbols: RSH1, AT-RSH1 | RELA/SPOT homolog 1 | chr... 134 2e-31
AT4G02260.1 | Symbols: RSH1, AT-RSH1, ATRSH1 | RELA/SPOT homolog... 134 2e-31
AT3G17470.1 | Symbols: ATCRSH, CRSH | Ca2+-activated RelA/spot h... 62 1e-09
>AT1G54130.1 | Symbols: RSH3, AT-RSH3, ATRSH3 | RELA/SPOT homolog 3
| chr1:20211177-20213761 FORWARD LENGTH=715
Length = 715
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 98/201 (48%), Positives = 120/201 (59%), Gaps = 12/201 (5%)
Query: 120 YTIFDDEKVQKAIAFARKAHRGQMRKTGEPYLTHCIHTGRILAALVPSSGKRAVDTVVAG 179
+ IF+DE V KA A KAHRGQMR TG+PYL HC+ T +LA + +S VVAG
Sbjct: 207 HKIFEDESVIKAFYEAEKAHRGQMRATGDPYLQHCVETAMLLADIGANS-----TVVVAG 261
Query: 180 ILHDVVDDACQSLQDIEAEFGDDVVKLVAGVSRLSYINQLLRRHRRVSVNQGVLGQEEAS 239
ILHD +DD+ S I FG V LV GVS+LS +++L R N EA
Sbjct: 262 ILHDTLDDSFMSYDYILRTFGSGVADLVEGVSKLSQLSKLARE------NNTACKTVEAD 315
Query: 240 NLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLQKAQAVAEETLIIWCSLASRLGLWA 299
L M L M D R VLIKLADRLHNM T+YALP K Q A+ETL I+ LA+RLG+ +
Sbjct: 316 RLHTMFLAMAD-ARAVLIKLADRLHNMMTLYALPPVKRQRFAKETLEIFAPLANRLGISS 374
Query: 300 LKSELEDLCFAVLQPQIFQKM 320
K +LE+LCF L P +M
Sbjct: 375 WKVKLENLCFKHLHPDQHHEM 395
Score = 105 bits (261), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 68/109 (62%), Gaps = 9/109 (8%)
Query: 455 ISIDKVYDTRALRVVVGDKKGTLHGPAVKCCYSLLDIVHRLWTPIDGEFDDYIINPKPSG 514
+++D+++D LR++V ++K CY L +VH+LW+ + G+ DYI +PK +G
Sbjct: 448 LTMDEIHDIHGLRLIVDNEKD---------CYKALGVVHKLWSEVPGKLKDYISHPKFNG 498
Query: 515 YQSLHTAVQGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKETGNPFSSI 563
YQSLHT V G PLEVQIRT+ MH AE G AAHW YKE SS
Sbjct: 499 YQSLHTVVMGDGTIPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCKHSSF 547
>AT3G14050.1 | Symbols: RSH2, AT-RSH2, ATRSH2 | RELA/SPOT homolog 2
| chr3:4650902-4653514 REVERSE LENGTH=709
Length = 709
Score = 160 bits (405), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 94/201 (46%), Positives = 118/201 (58%), Gaps = 12/201 (5%)
Query: 120 YTIFDDEKVQKAIAFARKAHRGQMRKTGEPYLTHCIHTGRILAALVPSSGKRAVDTVVAG 179
+ IF+DE V KA A KAHRGQMR + +PYL HC+ T +LA + +S VVAG
Sbjct: 203 HKIFNDESVIKAFYEAEKAHRGQMRASRDPYLQHCVETAMLLANIGANS-----TVVVAG 257
Query: 180 ILHDVVDDACQSLQDIEAEFGDDVVKLVAGVSRLSYINQLLRRHRRVSVNQGVLGQEEAS 239
+LHD +DD+ S I FG V LV GVS+LS +++L R N EA
Sbjct: 258 LLHDTIDDSFMSYDYILRNFGAGVADLVEGVSKLSQLSKLARE------NNTACKTVEAD 311
Query: 240 NLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLQKAQAVAEETLIIWCSLASRLGLWA 299
L M L M D R VLIKLADRLHNM+T+YAL K Q A+ETL I+ LA+RLG+
Sbjct: 312 RLHTMFLAMAD-ARAVLIKLADRLHNMKTLYALSPVKQQRFAKETLEIFAPLANRLGIST 370
Query: 300 LKSELEDLCFAVLQPQIFQKM 320
K +LE+LCF L P +M
Sbjct: 371 WKVQLENLCFKHLYPNQHNEM 391
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/109 (47%), Positives = 68/109 (62%), Gaps = 9/109 (8%)
Query: 455 ISIDKVYDTRALRVVVGDKKGTLHGPAVKCCYSLLDIVHRLWTPIDGEFDDYIINPKPSG 514
+++D+++D LR++V D +G CY L +VH LW+ + G+ DYI +PK +G
Sbjct: 444 LTVDEIHDIHGLRLIV-DNEGD--------CYKALGVVHSLWSEVPGKLKDYITHPKFNG 494
Query: 515 YQSLHTAVQGPDNSPLEVQIRTQRMHEYAEHGLAAHWLYKETGNPFSSI 563
YQSLHT V PLEVQIRTQ MH AE G AAHW YKE G +SS
Sbjct: 495 YQSLHTVVMDNGTVPLEVQIRTQEMHLQAEFGFAAHWRYKEGGCKYSSF 543
>AT4G02260.3 | Symbols: RSH1, AT-RSH1 | RELA/SPOT homolog 1 |
chr4:985451-990697 FORWARD LENGTH=816
Length = 816
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 126/219 (57%), Gaps = 24/219 (10%)
Query: 116 DITGYTIFDD-------------EKVQKAIAFARKAHRGQMRKTGEPYLTHCIHTGRILA 162
D+T T+++D E VQK + A +AH GQ R++GEP++ H + RIL
Sbjct: 125 DVTVETLWEDLFPSISYLPRKELEFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILG 184
Query: 163 ALVPSSGKRAVDTVVAGILHDVVDDA-CQSLQDIEAEFGDDVVKLVAGVSRLSYINQLLR 221
L + +++VAG+LHD V+D + + IE EFG V +V G +++S + +L
Sbjct: 185 EL-----ELDWESIVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKL-- 237
Query: 222 RHRRVSVNQGVLGQEEASNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLQKAQAVA 281
+ + +A +LR M L M D+ RV+++KLADRLHNMRT+ +P K ++A
Sbjct: 238 ---KCKTESETIQDVKADDLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIA 294
Query: 282 EETLIIWCSLASRLGLWALKSELEDLCFAVLQPQIFQKM 320
ETL ++ LA LG++++KSELE+L F + + + ++
Sbjct: 295 GETLQVFAPLAKLLGMYSIKSELENLSFMYVSAEDYDRV 333
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 456 SIDKVYDTRALRVVVGDKKGTLHGPAV---KCCYSLLDIVHRLWTPIDGEFDDYIINPKP 512
SI+ LR+VV K GP + CY +L +VH +W PI DYI PKP
Sbjct: 394 SINDYNQIAQLRIVVKPKPSVGVGPLCSPQQICYHVLGLVHEIWKPIPRTVKDYIATPKP 453
Query: 513 SGYQSLHTAV---QGPDNSPLEVQIRTQRMHEYAEHGLAAHW 551
+GYQSLHT V LEVQIRT+ M AE G+A ++
Sbjct: 454 NGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAVYY 495
>AT4G02260.2 | Symbols: RSH1, AT-RSH1 | RELA/SPOT homolog 1 |
chr4:985451-991178 FORWARD LENGTH=883
Length = 883
Score = 134 bits (338), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 126/219 (57%), Gaps = 24/219 (10%)
Query: 116 DITGYTIFDD-------------EKVQKAIAFARKAHRGQMRKTGEPYLTHCIHTGRILA 162
D+T T+++D E VQK + A +AH GQ R++GEP++ H + RIL
Sbjct: 125 DVTVETLWEDLFPSISYLPRKELEFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILG 184
Query: 163 ALVPSSGKRAVDTVVAGILHDVVDDA-CQSLQDIEAEFGDDVVKLVAGVSRLSYINQLLR 221
L + +++VAG+LHD V+D + + IE EFG V +V G +++S + +L
Sbjct: 185 EL-----ELDWESIVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKL-- 237
Query: 222 RHRRVSVNQGVLGQEEASNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLQKAQAVA 281
+ + +A +LR M L M D+ RV+++KLADRLHNMRT+ +P K ++A
Sbjct: 238 ---KCKTESETIQDVKADDLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIA 294
Query: 282 EETLIIWCSLASRLGLWALKSELEDLCFAVLQPQIFQKM 320
ETL ++ LA LG++++KSELE+L F + + + ++
Sbjct: 295 GETLQVFAPLAKLLGMYSIKSELENLSFMYVSAEDYDRV 333
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 456 SIDKVYDTRALRVVVGDKKGTLHGPAV---KCCYSLLDIVHRLWTPIDGEFDDYIINPKP 512
SI+ LR+VV K GP + CY +L +VH +W PI DYI PKP
Sbjct: 394 SINDYNQIAQLRIVVKPKPSVGVGPLCSPQQICYHVLGLVHEIWKPIPRTVKDYIATPKP 453
Query: 513 SGYQSLHTAV---QGPDNSPLEVQIRTQRMHEYAEHGLAAHW 551
+GYQSLHT V LEVQIRT+ M AE G+A ++
Sbjct: 454 NGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAVYY 495
>AT4G02260.1 | Symbols: RSH1, AT-RSH1, ATRSH1 | RELA/SPOT homolog 1
| chr4:985451-991178 FORWARD LENGTH=884
Length = 884
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 77/219 (35%), Positives = 126/219 (57%), Gaps = 24/219 (10%)
Query: 116 DITGYTIFDD-------------EKVQKAIAFARKAHRGQMRKTGEPYLTHCIHTGRILA 162
D+T T+++D E VQK + A +AH GQ R++GEP++ H + RIL
Sbjct: 125 DVTVETLWEDLFPSISYLPRKELEFVQKGLKLAFEAHHGQKRRSGEPFIIHPVAVARILG 184
Query: 163 ALVPSSGKRAVDTVVAGILHDVVDDA-CQSLQDIEAEFGDDVVKLVAGVSRLSYINQLLR 221
L + +++VAG+LHD V+D + + IE EFG V +V G +++S + +L
Sbjct: 185 EL-----ELDWESIVAGLLHDTVEDTNFITFEKIEEEFGATVRHIVEGETKVSKLGKL-- 237
Query: 222 RHRRVSVNQGVLGQEEASNLRVMLLGMVDDPRVVLIKLADRLHNMRTIYALPLQKAQAVA 281
+ + +A +LR M L M D+ RV+++KLADRLHNMRT+ +P K ++A
Sbjct: 238 ---KCKTESETIQDVKADDLRQMFLAMTDEVRVIIVKLADRLHNMRTLCHMPPHKQSSIA 294
Query: 282 EETLIIWCSLASRLGLWALKSELEDLCFAVLQPQIFQKM 320
ETL ++ LA LG++++KSELE+L F + + + ++
Sbjct: 295 GETLQVFAPLAKLLGMYSIKSELENLSFMYVSAEDYDRV 333
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 466 LRVVVGDKKGTLHGPAV---KCCYSLLDIVHRLWTPIDGEFDDYIINPKPSGYQSLHTAV 522
LR+VV K GP + CY +L +VH +W PI DYI PKP+GYQSLHT V
Sbjct: 405 LRIVVKPKPSVGVGPLCSPQQICYHVLGLVHEIWKPIPRTVKDYIATPKPNGYQSLHTTV 464
Query: 523 ---QGPDNSPLEVQIRTQRMHEYAEHGLAAHW 551
LEVQIRT+ M AE G+A ++
Sbjct: 465 IPFLYESMFRLEVQIRTEEMDLIAERGIAVYY 496
>AT3G17470.1 | Symbols: ATCRSH, CRSH | Ca2+-activated RelA/spot
homolog | chr3:5979868-5981968 FORWARD LENGTH=583
Length = 583
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 42/76 (55%), Gaps = 4/76 (5%)
Query: 483 KCCYSLLDIVHRLWTPIDGEFDDYIINPKPSGYQSLHTAVQGPDNS---PL-EVQIRTQR 538
K CY +I+ LW I DYI PK +GY+SLH AV D+ PL E+QIRT
Sbjct: 355 KACYRTSEIIRSLWKEIPHRTKDYIARPKENGYRSLHMAVDVSDSDQIRPLMEIQIRTMD 414
Query: 539 MHEYAEHGLAAHWLYK 554
M A G A+H LYK
Sbjct: 415 MDGSANAGTASHSLYK 430