Miyakogusa Predicted Gene

Lj1g3v3704970.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3704970.1 Non Chatacterized Hit- tr|I3S5C7|I3S5C7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,96.9,0,DAP_epimerase,Diaminopimelate epimerase, DapF;
DAP_EPIMERASE,Diaminopimelate epimerase, active
site;,NODE_21136_length_1091_cov_293.017426.path1.1
         (226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G53580.1 | Symbols:  | diaminopimelate epimerase family prote...   350   5e-97

>AT3G53580.1 | Symbols:  | diaminopimelate epimerase family protein
           | chr3:19864784-19866907 FORWARD LENGTH=362
          Length = 362

 Score =  350 bits (897), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 163/226 (72%), Positives = 185/226 (81%)

Query: 1   MRIFNSDGSEPEMCGNGVRCFAKFISQVENIHGRHSFTIHTGAGLIVPEVLEDGNVRVDM 60
           MRIFNSDGSEPEMCGNGVRCFA+FI+++EN+ G+HSFTIHTGAGLIVPE+ +DG V+VDM
Sbjct: 137 MRIFNSDGSEPEMCGNGVRCFARFIAELENLQGKHSFTIHTGAGLIVPEIQDDGQVKVDM 196

Query: 61  GEPVLKASDVPTKLPANKDGAVVKSELDVDGVIWNVTCVSMGNPHCITFSRKGSQSLLVD 120
           G P+LKA DVPTKL  NK  AVV++EL VDGV WNVTCVSMGNPHCITF +KG  +L VD
Sbjct: 197 GTPILKAQDVPTKLSGNKGEAVVEAELVVDGVSWNVTCVSMGNPHCITFGKKGGPNLKVD 256

Query: 121 ELKLAEIGPKFEHHEMFPARTNTEFVQVLSNSHLKMRVWERXXXXXXXXXXXXXXXVVAA 180
           +L L EIGPKFEHHEMFPARTNTEFV+VLS SHLKMRVWER               VVAA
Sbjct: 257 DLNLPEIGPKFEHHEMFPARTNTEFVEVLSRSHLKMRVWERGAGATLACGTGACALVVAA 316

Query: 181 VLEGHTGRNCTVDLPGGPLQIEWREEDNHVYMTGSADLVYYGSLPL 226
           VLEG   R CTVDLPGGPL+IEW++EDNH+YMTG A+ V+YGS  L
Sbjct: 317 VLEGRADRKCTVDLPGGPLEIEWKQEDNHIYMTGPAEAVFYGSALL 362