Miyakogusa Predicted Gene

Lj1g3v3646360.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3646360.1 Non Chatacterized Hit- tr|B9F138|B9F138_ORYSJ
Putative uncharacterized protein OS=Oryza sativa
subsp,83.87,0.00000008,P-loop containing nucleoside triphosphate
hydrolases,NULL; PROBABLE ATP-DEPENDENT DNA HELICASE
HFM1,,CUFF.31016.1
         (193 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G27730.1 | Symbols: RCK, MER3 | ATP binding;ATP-dependent hel...   313   4e-86
AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprot...    93   1e-19
AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprot...    93   1e-19
AT5G61140.2 | Symbols:  | U5 small nuclear ribonucleoprotein hel...    92   2e-19
AT5G61140.1 | Symbols:  | U5 small nuclear ribonucleoprotein hel...    92   2e-19
AT2G42270.1 | Symbols:  | U5 small nuclear ribonucleoprotein hel...    88   3e-18
AT4G32700.2 | Symbols:  | helicases;ATP-dependent helicases;nucl...    84   5e-17
AT3G46960.1 | Symbols:  | RNA helicase, ATP-dependent, SK12/DOB1...    54   5e-08
AT1G59760.1 | Symbols:  | RNA helicase, ATP-dependent, SK12/DOB1...    49   2e-06

>AT3G27730.1 | Symbols: RCK, MER3 | ATP binding;ATP-dependent
           helicases;DNA helicases | chr3:10273952-10280213 REVERSE
           LENGTH=1133
          Length = 1133

 Score =  313 bits (802), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 145/173 (83%), Positives = 160/173 (92%)

Query: 1   MRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFDILMQFSRGKSALIFCSTRKGAQEAAQRL 60
           MRPVKLTTKVFGYA AKNDFLFEKRLQNYI+DILMQ+S+GKSAL+FCSTRKGAQEAAQ+L
Sbjct: 235 MRPVKLTTKVFGYAAAKNDFLFEKRLQNYIYDILMQYSKGKSALVFCSTRKGAQEAAQKL 294

Query: 61  SQIVMTFGQSNPFITNSEQIDRLREASLSLSDKQMQSYILYGVGYHNGGLCLKDRNIVEG 120
           +Q  MT+G SNPFI + EQ++RLREAS   SDKQMQSYIL GVGYHNGGLC KDR++VEG
Sbjct: 295 AQTAMTYGYSNPFIKSREQLERLREASPMCSDKQMQSYILQGVGYHNGGLCQKDRSLVEG 354

Query: 121 LFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQV 173
           LFL GDIQV+CTTNTLAHGINLPAHTVVIKSTQHFNKEKG YMEYDRST+LQ+
Sbjct: 355 LFLNGDIQVICTTNTLAHGINLPAHTVVIKSTQHFNKEKGHYMEYDRSTLLQM 407


>AT1G20960.2 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
           helicase, putative | chr1:7302591-7309914 REVERSE
           LENGTH=2171
          Length = 2171

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 20/183 (10%)

Query: 2   RPVKLTTKVFGYAPAK--------NDFLFEKRLQNYIFDILMQFSRGK-SALIFCSTRKG 52
           RPV L  +  G +  K        ND  ++K L             GK   LIF  +RK 
Sbjct: 705 RPVPLHQQYIGISVKKPLQRFQLMNDLCYQKVLA----------GAGKHQVLIFVHSRKE 754

Query: 53  AQEAAQRLSQIVMTFGQSNPFI-TNSEQIDRLREASLSLSDKQMQSYILYGVGYHNGGLC 111
             + A+ +    M     + F+  +S   D L      + +  ++  + YG   H+ GL 
Sbjct: 755 TSKTARAIRDTAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLS 814

Query: 112 LKDRNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTIL 171
             DR IVE LF +G +QVL +T TLA G+NLPAHTV+IK TQ +N EKG +ME     ++
Sbjct: 815 RGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVM 874

Query: 172 QVF 174
           Q+ 
Sbjct: 875 QML 877



 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 13/180 (7%)

Query: 1    MRPVKLTTKVFGYAPAKNDFLFEKRLQ---NYIFDILMQFSRGK-SALIFCSTRKGAQ-E 55
            +RPV L   + G   +     FE R+Q      +  ++Q ++ K  A++F  TRK  +  
Sbjct: 1543 VRPVPLEIHIQGVDISS----FEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLT 1598

Query: 56   AAQRLSQIVMTFGQSNPFITNS-EQIDRLREASLSLSDKQMQSYILYGVGYHNGGLCLKD 114
            A   ++   M   QS  F+    E++D   E    + ++ ++  + +G+GY + GL   D
Sbjct: 1599 AVDLMAYSHMDNPQSPDFLLGKLEELDPFVE---QIREETLKETLCHGIGYLHEGLSSLD 1655

Query: 115  RNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQVF 174
            + IV  LF  G IQV   +++L  G  L AH VV+  TQ+++  +  + +Y    +LQ+ 
Sbjct: 1656 QEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMM 1715


>AT1G20960.1 | Symbols: emb1507 | U5 small nuclear ribonucleoprotein
           helicase, putative | chr1:7302591-7309914 REVERSE
           LENGTH=2171
          Length = 2171

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 89/183 (48%), Gaps = 20/183 (10%)

Query: 2   RPVKLTTKVFGYAPAK--------NDFLFEKRLQNYIFDILMQFSRGK-SALIFCSTRKG 52
           RPV L  +  G +  K        ND  ++K L             GK   LIF  +RK 
Sbjct: 705 RPVPLHQQYIGISVKKPLQRFQLMNDLCYQKVLA----------GAGKHQVLIFVHSRKE 754

Query: 53  AQEAAQRLSQIVMTFGQSNPFI-TNSEQIDRLREASLSLSDKQMQSYILYGVGYHNGGLC 111
             + A+ +    M     + F+  +S   D L      + +  ++  + YG   H+ GL 
Sbjct: 755 TSKTARAIRDTAMANDTLSRFLKEDSVTRDVLHSHEDIVKNSDLKDILPYGFAIHHAGLS 814

Query: 112 LKDRNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTIL 171
             DR IVE LF +G +QVL +T TLA G+NLPAHTV+IK TQ +N EKG +ME     ++
Sbjct: 815 RGDREIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVM 874

Query: 172 QVF 174
           Q+ 
Sbjct: 875 QML 877



 Score = 63.5 bits (153), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 89/180 (49%), Gaps = 13/180 (7%)

Query: 1    MRPVKLTTKVFGYAPAKNDFLFEKRLQ---NYIFDILMQFSRGK-SALIFCSTRKGAQ-E 55
            +RPV L   + G   +     FE R+Q      +  ++Q ++ K  A++F  TRK  +  
Sbjct: 1543 VRPVPLEIHIQGVDISS----FEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRLT 1598

Query: 56   AAQRLSQIVMTFGQSNPFITNS-EQIDRLREASLSLSDKQMQSYILYGVGYHNGGLCLKD 114
            A   ++   M   QS  F+    E++D   E    + ++ ++  + +G+GY + GL   D
Sbjct: 1599 AVDLMAYSHMDNPQSPDFLLGKLEELDPFVE---QIREETLKETLCHGIGYLHEGLSSLD 1655

Query: 115  RNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQVF 174
            + IV  LF  G IQV   +++L  G  L AH VV+  TQ+++  +  + +Y    +LQ+ 
Sbjct: 1656 QEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDGRENSHSDYPVPDLLQMM 1715


>AT5G61140.2 | Symbols:  | U5 small nuclear ribonucleoprotein helicase
            | chr5:24589999-24603311 FORWARD LENGTH=2157
          Length = 2157

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 3/174 (1%)

Query: 1    MRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFDILMQFSRGKSALIFCSTRKGAQEAAQRL 60
            +RPV +   + GY P K        +    +  +   S  K  LIF S+R+  +  A  L
Sbjct: 1546 VRPVPIEVHIQGY-PGKYYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDL 1604

Query: 61   SQIVMTFGQSNPFITNSEQIDRLREASLSLSDKQMQSYILYGVGYHNGGLCLKDRNIVEG 120
             Q   +      F++ SE+   L+     ++D+ ++  + +G+G H+ GL   DR+ VE 
Sbjct: 1605 IQFAASDEHPRQFLSVSEE--DLQMVLSQITDQNLRHTLQFGIGLHHAGLNDHDRSAVEE 1662

Query: 121  LFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQVF 174
            LF    IQVL +T+TLA G+NLPAH V+IK T++F+ +   Y+++  + ILQ+ 
Sbjct: 1663 LFTNNKIQVLVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMM 1716



 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 2   RPVKLTTKVFGYAPAKNDFLFEKRLQNYIF--DILMQFSRGKSALIFCSTRKGAQEAAQR 59
           RPV L  +  G    +++F     L N I    ++    +G  A+IF  +RK   + A++
Sbjct: 707 RPVPLAQQYIGIT--EHNFAARNELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEK 764

Query: 60  LSQIVMTFGQSNPFITNSE-QIDRLREASLSLSDKQMQSYILYGVGYHNGGLCLKDRNIV 118
           L  +   +   + F   +  Q   +++  +   +K +  +   G G H+ G+   DR + 
Sbjct: 765 LVDLARQYETLDLFTNETHPQFQLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLT 824

Query: 119 EGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQVF 174
           E LF  G ++VL  T TLA G+NLPAHTVVIK TQ ++ + G + +     ++Q+F
Sbjct: 825 ERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIF 880


>AT5G61140.1 | Symbols:  | U5 small nuclear ribonucleoprotein helicase
            | chr5:24589999-24603311 FORWARD LENGTH=2146
          Length = 2146

 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 93/174 (53%), Gaps = 3/174 (1%)

Query: 1    MRPVKLTTKVFGYAPAKNDFLFEKRLQNYIFDILMQFSRGKSALIFCSTRKGAQEAAQRL 60
            +RPV +   + GY P K        +    +  +   S  K  LIF S+R+  +  A  L
Sbjct: 1535 VRPVPIEVHIQGY-PGKYYCPRMNSMNKPAYAAICTHSPTKPVLIFVSSRRQTRLTALDL 1593

Query: 61   SQIVMTFGQSNPFITNSEQIDRLREASLSLSDKQMQSYILYGVGYHNGGLCLKDRNIVEG 120
             Q   +      F++ SE+   L+     ++D+ ++  + +G+G H+ GL   DR+ VE 
Sbjct: 1594 IQFAASDEHPRQFLSVSEE--DLQMVLSQITDQNLRHTLQFGIGLHHAGLNDHDRSAVEE 1651

Query: 121  LFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQVF 174
            LF    IQVL +T+TLA G+NLPAH V+IK T++F+ +   Y+++  + ILQ+ 
Sbjct: 1652 LFTNNKIQVLVSTSTLAWGVNLPAHLVIIKGTEYFDGKTKRYVDFPLTEILQMM 1705



 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 5/176 (2%)

Query: 2   RPVKLTTKVFGYAPAKNDFLFEKRLQNYIF--DILMQFSRGKSALIFCSTRKGAQEAAQR 59
           RPV L  +  G    +++F     L N I    ++    +G  A+IF  +RK   + A++
Sbjct: 707 RPVPLAQQYIGIT--EHNFAARNELLNEICYKKVVDSIKQGHQAMIFVHSRKDTSKTAEK 764

Query: 60  LSQIVMTFGQSNPFITNSE-QIDRLREASLSLSDKQMQSYILYGVGYHNGGLCLKDRNIV 118
           L  +   +   + F   +  Q   +++  +   +K +  +   G G H+ G+   DR + 
Sbjct: 765 LVDLARQYETLDLFTNETHPQFQLMKKDVMKSRNKDLVKFFEAGFGIHHAGMLRSDRTLT 824

Query: 119 EGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQVF 174
           E LF  G ++VL  T TLA G+NLPAHTVVIK TQ ++ + G + +     ++Q+F
Sbjct: 825 ERLFSDGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDAKAGGWKDLGMLDVMQIF 880


>AT2G42270.1 | Symbols:  | U5 small nuclear ribonucleoprotein
           helicase | chr2:17604330-17610848 FORWARD LENGTH=2172
          Length = 2172

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 90/174 (51%), Gaps = 2/174 (1%)

Query: 2   RPVKLTTKVFGYAPAKNDFLFEKRLQNYIFDILMQFSRGKSALIFCSTRKGAQEAAQRLS 61
           RPV L  +  G    K    F+  + +  +  ++  +     LIF  +RK   + A+ + 
Sbjct: 706 RPVPLGQQYIGINVKKPLRRFQ-LMNDICYQKVVAVAGKHQVLIFVHSRKETAKTARAIR 764

Query: 62  QIVMTFGQSNPFI-TNSEQIDRLREASLSLSDKQMQSYILYGVGYHNGGLCLKDRNIVEG 120
              M     + F+  +S+  + L+  +  L +  ++  + YG   H+ GL   DR IVE 
Sbjct: 765 DTAMANDTLSRFLKEDSQSREILKCLAGLLKNNDLKELLPYGFAIHHAGLTRTDREIVEN 824

Query: 121 LFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQVF 174
            F  G++QVL +T TLA G+NLPAHTV+IK TQ +N E+G +ME     ++Q+ 
Sbjct: 825 QFRWGNLQVLISTATLAWGVNLPAHTVIIKGTQVYNPERGEWMELSPLDVMQMI 878



 Score = 60.1 bits (144), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 89/180 (49%), Gaps = 13/180 (7%)

Query: 1    MRPVKLTTKVFGYAPAKNDFL-FEKRLQ---NYIFDILMQFSRGK-SALIFCSTRKGAQ- 54
            +RPV L   + G      D L FE R+Q      +  ++Q ++ K  A++F  TRK  + 
Sbjct: 1544 VRPVPLEIHIHGV-----DILSFEARMQAMTKPTYTAIVQHAKNKKPAIVFVPTRKHVRL 1598

Query: 55   EAAQRLSQIVMTFGQSNPFITNSEQIDRLREASLSLSDKQMQSYILYGVGYHNGGLCLKD 114
             A   ++   M   +S  F+  +  ++ L    + + ++ ++  + +G+GY + GL   D
Sbjct: 1599 TAVDLIAYSHMDNMKSPDFLLGN--LEELEPFLIQICEETLKETLRHGIGYLHEGLSNLD 1656

Query: 115  RNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEKGLYMEYDRSTILQVF 174
            + IV  LF  G IQV   +++L  G  L AH VV+  T  ++  +  + +Y  S +LQ+ 
Sbjct: 1657 QEIVTQLFEAGRIQVCVMSSSLCWGTPLKAHLVVVMGTHFYDGRENSHSDYPISNLLQMM 1716


>AT4G32700.2 | Symbols:  | helicases;ATP-dependent helicases;nucleic
           acid binding;ATP binding;DNA-directed DNA
           polymerases;DNA binding | chr4:15767440-15779185 FORWARD
           LENGTH=2154
          Length = 2154

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 70/116 (60%), Gaps = 6/116 (5%)

Query: 40  GKSALIFCSTRKGAQEAAQRLSQIVMTF-----GQSNPFITNSEQIDRLREASLSLSDKQ 94
           G S LIFCS+RKG +  A+ +S+++        G+++ F+     ID LR  S S  D  
Sbjct: 769 GNSVLIFCSSRKGCESTARHISKLIKNVPVNVDGENSEFMDIRSAIDALRR-SPSGVDPV 827

Query: 95  MQSYILYGVGYHNGGLCLKDRNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIK 150
           ++  +  GV YH+ GL +++R IVE  + KG ++VL  T+TLA G+NLPA  V+ +
Sbjct: 828 LEETLPSGVAYHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFR 883


>AT3G46960.1 | Symbols:  | RNA helicase, ATP-dependent, SK12/DOB1
           protein | chr3:17291004-17298067 REVERSE LENGTH=1347
          Length = 1347

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 40/63 (63%)

Query: 94  QMQSYILYGVGYHNGGLCLKDRNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQ 153
           ++QS +  G+G H+ GL    + +VE LF +G I+VL +T T A G+N PA TVV  + +
Sbjct: 706 RLQSLLHRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALR 765

Query: 154 HFN 156
            F+
Sbjct: 766 KFD 768


>AT1G59760.1 | Symbols:  | RNA helicase, ATP-dependent, SK12/DOB1
           protein | chr1:21984571-21990110 REVERSE LENGTH=988
          Length = 988

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 44  LIFCSTRKGAQEAAQRLSQIVMTFGQSNPFITN--SEQIDRLREASLSLSD-KQMQSYIL 100
           ++F  ++K  +  A ++S++V+        +    +  ID L +    L     +   + 
Sbjct: 324 ILFSFSKKECEALAMQMSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILPILK 383

Query: 101 YGVGYHNGGLCLKDRNIVEGLFLKGDIQVLCTTNTLAHGINLPAHTVVIKSTQHFNKEK 159
            G+G H+ GL    + ++E LF +G I+ L  T T + G+N+PA TVV  + + F+ +K
Sbjct: 384 RGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDK 442