Miyakogusa Predicted Gene

Lj1g3v3642120.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3642120.1 tr|I1N755|I1N755_SOYBN Peptide deformylase
OS=Glycine max GN=Gma.56724 PE=3
SV=1,73.78,0,PDEFORMYLASE,Formylmethionine deformylase;
Pep_deformylase,Formylmethionine deformylase; Peptide def,CUFF.30992.1
         (253 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G14660.2 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase...   325   1e-89
AT5G14660.1 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase...   325   1e-89
AT1G15390.1 | Symbols: PDF1A, ATDEF1 | peptide deformylase 1A | ...    93   2e-19

>AT5G14660.2 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase 1B
           | chr5:4727129-4728671 REVERSE LENGTH=273
          Length = 273

 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 151/205 (73%), Positives = 178/205 (86%)

Query: 48  ELASPGDLEFVTPLKVVEYPDPRLRAKNKRIATFDDNLKKLVDEMFDVMYNTDGIGLSAP 107
           ++AS  D++F TPLK+VEYPDP LRAKNKRI  FD+NLK LVD MFDVMY TDGIGLSAP
Sbjct: 68  KVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAP 127

Query: 108 QVGINVQLMVFNPVGERGEGEEIVLINPRVSKYSKKLTLFNEGCLSFPGIYADVMRPESV 167
           QVG+NVQLMVFNP GE GEG+EIVL+NP++ KYS KL  F+EGCLSFPGIYA+V+RP+SV
Sbjct: 128 QVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSV 187

Query: 168 KIDARDVNGTRFSFNLSDLPARVFQHEFDHLEGILFFDRMTDGVLDSIREQLQALEMKYE 227
           KIDARD+ G RFS +LS LPAR+FQHE+DHLEG+LFFDRMTD VLDSIRE+L+ALE KYE
Sbjct: 188 KIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247

Query: 228 RQTGFPSPEKIENHRRRKVAVGFGK 252
            +TG PSPE++E  ++RK  VGFGK
Sbjct: 248 EKTGLPSPERVEARQKRKAGVGFGK 272


>AT5G14660.1 | Symbols: PDF1B, DEF2, ATDEF2 | peptide deformylase 1B
           | chr5:4727129-4728671 REVERSE LENGTH=273
          Length = 273

 Score =  325 bits (834), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 151/205 (73%), Positives = 178/205 (86%)

Query: 48  ELASPGDLEFVTPLKVVEYPDPRLRAKNKRIATFDDNLKKLVDEMFDVMYNTDGIGLSAP 107
           ++AS  D++F TPLK+VEYPDP LRAKNKRI  FD+NLK LVD MFDVMY TDGIGLSAP
Sbjct: 68  KVASATDVQFETPLKIVEYPDPILRAKNKRIDIFDENLKNLVDAMFDVMYKTDGIGLSAP 127

Query: 108 QVGINVQLMVFNPVGERGEGEEIVLINPRVSKYSKKLTLFNEGCLSFPGIYADVMRPESV 167
           QVG+NVQLMVFNP GE GEG+EIVL+NP++ KYS KL  F+EGCLSFPGIYA+V+RP+SV
Sbjct: 128 QVGLNVQLMVFNPAGEPGEGKEIVLVNPKIKKYSDKLVPFDEGCLSFPGIYAEVVRPQSV 187

Query: 168 KIDARDVNGTRFSFNLSDLPARVFQHEFDHLEGILFFDRMTDGVLDSIREQLQALEMKYE 227
           KIDARD+ G RFS +LS LPAR+FQHE+DHLEG+LFFDRMTD VLDSIRE+L+ALE KYE
Sbjct: 188 KIDARDITGERFSISLSRLPARIFQHEYDHLEGVLFFDRMTDQVLDSIREELEALEKKYE 247

Query: 228 RQTGFPSPEKIENHRRRKVAVGFGK 252
            +TG PSPE++E  ++RK  VGFGK
Sbjct: 248 EKTGLPSPERVEARQKRKAGVGFGK 272


>AT1G15390.1 | Symbols: PDF1A, ATDEF1 | peptide deformylase 1A |
           chr1:5294653-5295625 FORWARD LENGTH=269
          Length = 269

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 17/164 (10%)

Query: 62  KVVEYPDPRLRAKNKRI---ATFDDNLKKLVDEMFDVMYNTDGIGLSAPQVGINVQLMVF 118
           ++V   DP L  K + +       + ++K++D+M  VM    G+GL+APQ+G+ ++++V 
Sbjct: 82  EIVASGDPVLHEKAREVDPGEIGSERIQKIIDDMIKVMRLAPGVGLAAPQIGVPLRIIVL 141

Query: 119 NPVGE--------------RGEGEEIVLINPRVSKYSKKLTLFNEGCLSFPGIYADVMRP 164
               E              R   + +V++NP + + S K  LF EGCLS  G  A V R 
Sbjct: 142 EDTKEYISYAPKEEILAQERRHFDLMVMVNPVLKERSNKKALFFEGCLSVDGFRAAVERY 201

Query: 165 ESVKIDARDVNGTRFSFNLSDLPARVFQHEFDHLEGILFFDRMT 208
             V +   D  G R   N S   AR+ QHE DHL+G L+ D+M 
Sbjct: 202 LEVVVTGYDRQGKRIEVNASGWQARILQHECDHLDGNLYVDKMV 245