Miyakogusa Predicted Gene

Lj1g3v3642010.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3642010.3 tr|G7K541|G7K541_MEDTR Bromodomain adjacent to
zinc finger domain protein 2B OS=Medicago truncatula
,57.35,0.000000000000009, ,CUFF.31007.3
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    64   3e-11
AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily ...    63   8e-11

>AT3G02890.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr3:640828-645303 FORWARD LENGTH=994
          Length = 994

 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 34/50 (68%)

Query: 1   MNYMISNDLALKGIFNGFELIIFPSNILPEKSQLWNQRLFLWGVFKAQKQ 50
           ++ MI  DLALKG   G EL+IF SN LP+  Q WN   FLWGVF+ +K+
Sbjct: 788 VDNMIQKDLALKGNLEGVELLIFASNQLPQDCQRWNMLFFLWGVFRGKKE 837


>AT5G16680.1 | Symbols:  | RING/FYVE/PHD zinc finger superfamily
           protein | chr5:5467534-5472956 REVERSE LENGTH=1311
          Length = 1311

 Score = 62.8 bits (151), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 35/52 (67%)

Query: 1   MNYMISNDLALKGIFNGFELIIFPSNILPEKSQLWNQRLFLWGVFKAQKQRN 52
           ++ MI NDLALKG  +  +L+IF SN LP   Q WN   FLWGVF+ +K+ N
Sbjct: 925 VDNMIKNDLALKGNLDNVDLLIFASNQLPSNCQRWNMLYFLWGVFQGRKETN 976