Miyakogusa Predicted Gene

Lj1g3v3592790.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3592790.1 Non Chatacterized Hit- tr|B9T5H6|B9T5H6_RICCO 60S
ribosomal protein L32, putative OS=Ricinus
communi,91.73,0,Ribosomal_L32e,Ribosomal protein L32e;
Q45NI6_MEDSA_Q45NI6;,Ribosomal protein L32e; 60S RIBOSOMAL
PR,CUFF.30929.1
         (133 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G18100.1 | Symbols:  | Ribosomal protein L32e | chr4:10035715...   225   7e-60
AT5G46430.2 | Symbols:  | Ribosomal protein L32e | chr5:18833429...   222   5e-59
AT5G46430.1 | Symbols:  | Ribosomal protein L32e | chr5:18833429...   222   5e-59

>AT4G18100.1 | Symbols:  | Ribosomal protein L32e |
           chr4:10035715-10036475 REVERSE LENGTH=133
          Length = 133

 Score =  225 bits (573), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 107/133 (80%), Positives = 113/133 (84%)

Query: 1   MAVPLLTXXXXXXXXXXXXXPQSDRKICVKPSWRRPKGIDSRVRRKFKGCVLMPNIGYGS 60
           MAVPLLT             PQSDR+I VK SWRRPKGIDSRVRRKFKG  LMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKDIVERAAQLDVVV 120
           DKKTRHYLPNGFKKFVVHN  +LELLMMHNRTYCAEIAHNVST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 133
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133


>AT5G46430.2 | Symbols:  | Ribosomal protein L32e |
           chr5:18833429-18834409 FORWARD LENGTH=133
          Length = 133

 Score =  222 bits (566), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 112/133 (84%)

Query: 1   MAVPLLTXXXXXXXXXXXXXPQSDRKICVKPSWRRPKGIDSRVRRKFKGCVLMPNIGYGS 60
           MAVPLLT             PQSDR+I VK SWRRPKGIDSRVRRKFKG  LMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKDIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN  +LELLMMHNRTYCAEIAHN+ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 133
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133


>AT5G46430.1 | Symbols:  | Ribosomal protein L32e |
           chr5:18833429-18834409 FORWARD LENGTH=133
          Length = 133

 Score =  222 bits (566), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 104/133 (78%), Positives = 112/133 (84%)

Query: 1   MAVPLLTXXXXXXXXXXXXXPQSDRKICVKPSWRRPKGIDSRVRRKFKGCVLMPNIGYGS 60
           MAVPLLT             PQSDR+I VK SWRRPKGIDSRVRRKFKG  LMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNVKDLELLMMHNRTYCAEIAHNVSTRKRKDIVERAAQLDVVV 120
           DKKTRHYLPNGFKKF+VHN  +LELLMMHNRTYCAEIAHN+ST+KRK IVERA+QLDVVV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 133
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133