Miyakogusa Predicted Gene

Lj1g3v3580650.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3580650.1 CUFF.30962.1
         (218 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G59240.1 | Symbols:  | Ribosomal protein S8e family protein |...   319   1e-87
AT5G20290.1 | Symbols:  | Ribosomal protein S8e family protein |...   303   6e-83

>AT5G59240.1 | Symbols:  | Ribosomal protein S8e family protein |
           chr5:23902626-23903670 REVERSE LENGTH=210
          Length = 210

 Score =  319 bits (817), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/205 (77%), Positives = 167/205 (81%), Gaps = 9/205 (4%)

Query: 1   MGISRDSMHKRRATGGXXXXXXXXXXYELGRQAANTKLSSNKTIRRIRVRGGNVKWRALR 60
           MGISRDS+HKRRATGG          YELGRQ ANTKLSSNKT+RRIRVRGGNVKWRALR
Sbjct: 1   MGISRDSIHKRRATGGKQKMWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNFSWGSETVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGNFSWGSE VTRKTR+LDV YNASNNELVRTQTLVKSAIVQVDAAPFKQ YLQHYGV
Sbjct: 61  LDTGNFSWGSEAVTRKTRILDVAYNASNNELVRTQTLVKSAIVQVDAAPFKQGYLQHYGV 120

Query: 121 DIGRXXXXXXXXXXXXXXXXXXXDGKKSNHVQRKLENRQKDRTLDAHIEEQFSGGRLLAC 180
           DIGR                   + KKSNHVQRKLE RQ+ R LD+H+EEQFS GRLLAC
Sbjct: 121 DIGR---------KKKGEAVTTEEVKKSNHVQRKLEMRQEGRALDSHLEEQFSSGRLLAC 171

Query: 181 ISSRPGQCGRADGYILEGKELEFYM 205
           I+SRPGQCGRADGYILEGKELEFYM
Sbjct: 172 IASRPGQCGRADGYILEGKELEFYM 196


>AT5G20290.1 | Symbols:  | Ribosomal protein S8e family protein |
           chr5:6851695-6853012 REVERSE LENGTH=222
          Length = 222

 Score =  303 bits (776), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 150/210 (71%), Positives = 167/210 (79%), Gaps = 5/210 (2%)

Query: 1   MGISRDSMHKRRATGGXXXXXXXXXXYELGRQAANTKLSSNKTIRRIRVRGGNVKWRALR 60
           MGISRDS+HKRRATGG          YE+GRQ ANTKLSSNKT+RRIRVRGGNVKWRALR
Sbjct: 1   MGISRDSIHKRRATGGKQKQWRKKRKYEMGRQPANTKLSSNKTVRRIRVRGGNVKWRALR 60

Query: 61  LDTGNFSWGSETVTRKTRLLDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGV 120
           LDTGN+SWGSE  TRKTR+LDVVYNASNNELVRT+TLVKSAIVQVDAAPFKQWYL HYGV
Sbjct: 61  LDTGNYSWGSEATTRKTRVLDVVYNASNNELVRTKTLVKSAIVQVDAAPFKQWYLSHYGV 120

Query: 121 DIGRXXXXXX-----XXXXXXXXXXXXXDGKKSNHVQRKLENRQKDRTLDAHIEEQFSGG 175
           ++GR                        + KKSNH+ RK+ +RQ+ R+LD+HIE+QF+ G
Sbjct: 121 ELGRKKKSASSTKKDGEEGEEAAVAAPEEVKKSNHLLRKIASRQEGRSLDSHIEDQFASG 180

Query: 176 RLLACISSRPGQCGRADGYILEGKELEFYM 205
           RLLACISSRPGQCGRADGYILEGKELEFYM
Sbjct: 181 RLLACISSRPGQCGRADGYILEGKELEFYM 210