Miyakogusa Predicted Gene

Lj1g3v3560250.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3560250.1 Non Chatacterized Hit- tr|B9TDS4|B9TDS4_RICCO
Putative uncharacterized protein (Fragment)
OS=Ricinus,65.82,4e-18,DNA-binding domain,DNA-binding, integrase-type;
DNA-binding domain in plant proteins such as,AP2/ERF,CUFF.30874.1
         (233 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13040.1 | Symbols:  | Integrase-type DNA-binding superfamily...   149   1e-36
AT4G13040.3 | Symbols:  | Integrase-type DNA-binding superfamily...   149   2e-36
AT4G13040.2 | Symbols:  | Integrase-type DNA-binding superfamily...   147   5e-36

>AT4G13040.1 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr4:7614100-7615310 FORWARD LENGTH=226
          Length = 226

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 77/93 (82%)

Query: 102 LHNQETCLMRGVYFKNMKWQAAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGREPNFEL 161
           +HNQE CLMRGVY+KNMKWQAAIKV+KKQIHLGT  SQEEAA LYDRAAFMCGREPNFEL
Sbjct: 109 VHNQEPCLMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFEL 168

Query: 162 PEEEKRELHKFKWDEFLAVTRQAITRKKHKRRL 194
            EE  REL +  W+EFL  TR+ IT KK K R+
Sbjct: 169 SEEVIRELKQQSWEEFLNCTRRTITNKKPKSRI 201


>AT4G13040.3 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr4:7613720-7615310 FORWARD LENGTH=246
          Length = 246

 Score =  149 bits (375), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 77/93 (82%)

Query: 102 LHNQETCLMRGVYFKNMKWQAAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGREPNFEL 161
           +HNQE CLMRGVY+KNMKWQAAIKV+KKQIHLGT  SQEEAA LYDRAAFMCGREPNFEL
Sbjct: 129 VHNQEPCLMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFEL 188

Query: 162 PEEEKRELHKFKWDEFLAVTRQAITRKKHKRRL 194
            EE  REL +  W+EFL  TR+ IT KK K R+
Sbjct: 189 SEEVIRELKQQSWEEFLNCTRRTITNKKPKSRI 221


>AT4G13040.2 | Symbols:  | Integrase-type DNA-binding superfamily
           protein | chr4:7614292-7615310 FORWARD LENGTH=170
          Length = 170

 Score =  147 bits (372), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 70/93 (75%), Positives = 77/93 (82%)

Query: 102 LHNQETCLMRGVYFKNMKWQAAIKVDKKQIHLGTVGSQEEAAHLYDRAAFMCGREPNFEL 161
           +HNQE CLMRGVY+KNMKWQAAIKV+KKQIHLGT  SQEEAA LYDRAAFMCGREPNFEL
Sbjct: 53  VHNQEPCLMRGVYYKNMKWQAAIKVEKKQIHLGTFSSQEEAARLYDRAAFMCGREPNFEL 112

Query: 162 PEEEKRELHKFKWDEFLAVTRQAITRKKHKRRL 194
            EE  REL +  W+EFL  TR+ IT KK K R+
Sbjct: 113 SEEVIRELKQQSWEEFLNCTRRTITNKKPKSRI 145