Miyakogusa Predicted Gene

Lj1g3v3557030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3557030.1 tr|F2EFC3|F2EFC3_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2
SV=1,35.12,0.00000000000001,LOW-TEMPERATURE VIABILITY PROTEIN
LTV1-RELATED,NULL; coiled-coil,NULL; seg,NULL,CUFF.30856.1
         (513 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G49990.1 | Symbols:  | unknown protein; Has 1524 Blast hits t...   297   9e-81

>AT3G49990.1 | Symbols:  | unknown protein; Has 1524 Blast hits to
           1298 proteins in 225 species: Archae - 9; Bacteria - 84;
           Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17;
           Other Eukaryotes - 658 (source: NCBI BLink). |
           chr3:18532492-18534000 REVERSE LENGTH=502
          Length = 502

 Score =  297 bits (761), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 212/535 (39%), Positives = 289/535 (54%), Gaps = 63/535 (11%)

Query: 1   MGKKKFIDKKNAATFQLIARDSSDPAFSTS---DRVFIRVDNNPLS-------------- 43
           MGKKKFIDKK AATF+L  RD+SDP +S +   D++F+RVD NP++              
Sbjct: 1   MGKKKFIDKKKAATFELCPRDTSDPRYSDAPGGDKIFLRVDQNPVNINGFIEEDEEEEGD 60

Query: 44  TXXXXXXXXXXXXXXXXXXXXXXXXXXXVRREILELGFPDDGYNYLNHMREIKNTGGGSA 103
           +                           VR+EILELG+PDDGYNYL H+REIKNTGGGS 
Sbjct: 61  SSRFDDAPEEMDYGYSSFGDSSSSLPAHVRKEILELGYPDDGYNYLEHLREIKNTGGGSN 120

Query: 104 FFHNPKFKLQHVPHDIKAYDASRLPIS-EADREPEENTI-YTVAAKTTSIRVQKAIDPEV 161
           F+ NPK+++  +P D+KAYDASR+ IS   + E  +N + Y+VA+KT +++VQKAIDPEV
Sbjct: 121 FYVNPKYEVAQLPRDVKAYDASRVKISGMVNEEGNDNKLMYSVASKTVNVKVQKAIDPEV 180

Query: 162 AALLDDTDLSRFGSD-EDLEEDFVVQANLGEDENDEDKELICNG-MNFSEESMIARSKKN 219
           AALL+++D S FGSD EDLEEDFVVQANL +     +   + NG + FS    +   + +
Sbjct: 181 AALLENSDGSEFGSDVEDLEEDFVVQANLTQ---KGESSGVSNGELEFSVRREVRERESD 237

Query: 220 AQVLQDFDHSKVIDDCGSLDGVTNGVAGEDRAGDKPRARRLLDDQFDLLECQEYGTDDDG 279
             V ++                             PR  R +D+ FD LE  EYG+D DG
Sbjct: 238 EPVAEN-----------------------------PRVPRQIDELFDQLELNEYGSDSDG 268

Query: 280 ELY----ENYQAEDEFLAEKLKGSLNNHAMD-SLEPDDDKYRVPADLLKKNETPNSEEQE 334
           + Y       + E++F+A++++  ++  A D  LE   +KY  PAD+LK +++   +E+ 
Sbjct: 269 DGYIAEDGEEEEEEDFMAQEVQNLIHGKAKDYELE---EKYMNPADILKNSDSVRDKEEV 325

Query: 335 DFAADLIRRIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTIVSTYSNLDNHPGKIEA 394
           D AA +IRR                                 TIVSTYSNLDN PGKI A
Sbjct: 326 DTAAHVIRRTVEYGENFDNGNEDEFVELTEESSDESEKHDCETIVSTYSNLDNLPGKILA 385

Query: 395 PGVARKKKLAETMSAALNSSSQIISLRGKEKLPVDFLPGGRKPSTEKVKGLSNANTEQYT 454
              AR+KKL+ET++ AL+S+ +II+L+G+E++PV+FLPG R   T+    +  A  E   
Sbjct: 386 AESARQKKLSETLANALSSNGRIINLQGRERIPVEFLPGRRAEQTDVKAEIPKA--EPIK 443

Query: 455 RKQHGLESXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKGEAHRAQRAAAVSGPSS 509
           RK HG ES                           LY GE  RAQRA A SGPSS
Sbjct: 444 RKTHGQESKEEKKERKNAVKAEKREARIIKKQTKMLYCGETQRAQRAVATSGPSS 498