Miyakogusa Predicted Gene

Lj1g3v3556890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3556890.1 Non Chatacterized Hit- tr|I1LWI6|I1LWI6_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,69.41,0.0000000000005,PH domain-like,NULL; HMG-box,High mobility
group, superfamily; high mobility group,High mobility gro,CUFF.30926.1
         (494 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G28730.1 | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility gr...   464   e-131

>AT3G28730.1 | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility group
           | chr3:10784954-10788498 FORWARD LENGTH=646
          Length = 646

 Score =  464 bits (1193), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 268/486 (55%), Positives = 322/486 (66%), Gaps = 33/486 (6%)

Query: 19  KDSFREKSFHMPNSNTQYVSDEIMPMADVGDEIMPMADVGDVIMPMADVGDEIMPMADVD 78
           KDS  E SFH+PNSNTQ+V DE  P + V                     D I+ MADV 
Sbjct: 162 KDSLMEISFHIPNSNTQFVGDENRPPSQV-------------------FNDTIVAMADVS 202

Query: 79  AGGEDAVVTFEGIGIFTPRGRYSVELHLSFFRLRGPANDFKIQYSSIVRLYLLPKLNQPR 138
            G EDAVVTFE I I TPRGRY+VELHLSF RL+G ANDFKIQYSS+VRL+LLPK NQP 
Sbjct: 203 PGVEDAVVTFESIAILTPRGRYNVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPH 262

Query: 139 TFVVISLDPPIREGQTLYPHIVMQFESDFVVQCELAINEDLYNTKYNDKLELSYKGLIHG 198
           TFVVISLDPPIR+GQT+YPHIVMQFE+D VV+ EL+I+++L NTK+ DKLE SYKGLIH 
Sbjct: 263 TFVVISLDPPIRKGQTMYPHIVMQFETDTVVESELSISDELMNTKFKDKLERSYKGLIHE 322

Query: 199 VFTTILCGLSGSKVTKPGTFRSFVHGYAVKSSLKAEEGYLYPLEKSFFFLPKPPTLILHE 258
           VFTT+L  LSG+K+TKPG FRS   G+AVKSSLKAE+G LYPLEK FFFLPKPPTLILH+
Sbjct: 323 VFTTVLRWLSGAKITKPGKFRSSQDGFAVKSSLKAEDGVLYPLEKGFFFLPKPPTLILHD 382

Query: 259 EIDYLGFEQHIARGSKICYFHLLIRLKSEQEHLFCNIQRNEFNKLTAFIISKGLKLMDLR 318
           EIDY+ FE+H A G+ + YF LLIRLK++ EHLF NIQRNE++ L  FI SKGLK+M+L 
Sbjct: 383 EIDYVEFERHAAGGANMHYFDLLIRLKTDHEHLFRNIQRNEYHNLYTFISSKGLKIMNLG 442

Query: 319 SAHAQPAVALARILG---NDDAVDPHLERIKNEAXXXXXXXXXXXXXXXXXXXXSPTDDC 375
            A    A  +A +LG   +DDAVDPHL RI+N+A                    SPTDD 
Sbjct: 443 GAGT--ADGVAAVLGDNDDDDAVDPHLTRIRNQAADESDEEDEDFVMGEDDDGGSPTDDS 500

Query: 376 GGENSDANDGG-----DXXXXXXXXXXXXDLSXXXXXXXXXXXXXXXXXXXXXXXXXXXX 430
           GG++SDA++GG     +                                           
Sbjct: 501 GGDDSDASEGGVGEIKEKSIKKEPKKEASSSKGLPPKRKTVAADEGSSKRKKPKKKKDPN 560

Query: 431 XXXRAMSGFMVFSQMETE---KTNSGMSFTDVGKVLGEKWKKMSAEDKEPYEAKAARDDK 487
              RAMSGFM FSQME +   K + G++F +VGKVLG+KW++MSA+DKEPYEAK A+ DK
Sbjct: 561 APKRAMSGFMFFSQMERDNIKKEHPGIAFGEVGKVLGDKWRQMSADDKEPYEAK-AQVDK 619

Query: 488 KFYMDE 493
           + Y DE
Sbjct: 620 QRYKDE 625