Miyakogusa Predicted Gene

Lj1g3v3554780.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3554780.2 tr|A9TT83|A9TT83_PHYPA Predicted protein
(Fragment) OS=Physcomitrella patens subsp. patens
GN=PHYPAD,32.32,5e-18, ,CUFF.30837.2
         (432 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G11320.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   340   9e-94

>AT1G11320.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion,
           plastid; EXPRESSED IN: 7 plant structures; EXPRESSED
           DURING: C globular stage, F mature embryo stage, petal
           differentiation and expansion stage, E expanded
           cotyledon stage, D bilateral stage; Has 46 Blast hits to
           46 proteins in 14 species: Archae - 0; Bacteria - 2;
           Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:3807241-3808728 FORWARD LENGTH=424
          Length = 424

 Score =  340 bits (873), Expect = 9e-94,   Method: Compositional matrix adjust.
 Identities = 186/446 (41%), Positives = 261/446 (58%), Gaps = 36/446 (8%)

Query: 1   MDPVGVVFDHFKAFAKSGHDFFDGVF------RRRNPIEILKRLQRESFSDLMKLRDRQE 54
           MDP+  V +  K+F KS  D     F       R NPI+ILKRLQRE+FSDLMKLR+RQE
Sbjct: 1   MDPIASVLEKVKSFTKSSQDLVSRHFGFHENPSRLNPIDILKRLQRETFSDLMKLRERQE 60

Query: 55  KVEKILSFYKSSNEGPFHEATTRVRGQVDLLGALLFMDNLNQQNVDATNRSGIRSGVNSN 114
           KVE+I+S  K S  GPF E +T VRG+VD+LGA+L M N ++++ +  N+ G+R G+ S 
Sbjct: 61  KVERIISSQKLSKGGPFQETSTHVRGEVDVLGAILLMGNTDEESFNGLNKEGVRPGLLSR 120

Query: 115 FIFETTIRQKDTLSAEFVATKKGKEVLDDHDVEVPLSLRKVCYTANVNDFLSLMAIPMGA 174
           F+FET++R+ D L AE VA   G     D  +   LSL KV Y A++ND+ S +AIP+GA
Sbjct: 121 FVFETSLRETDRLVAELVAGYNGAGSHRDF-LGGELSLAKVFYKADINDWFSAIAIPVGA 179

Query: 175 QCRDVAVASNSVDQLGKGLTDFSSFGPPLLNLHNGSGIGITVRKSNFIASLAQFVVGLRS 234
             RD+  ++ S  Q G  LT+ S  GPPLL+ HNGS IG+T RKSN  ASLAQ +  +  
Sbjct: 180 HFRDIEASTVSSYQ-GMSLTEVSELGPPLLSQHNGSAIGLTFRKSNITASLAQSMSNVEV 238

Query: 235 SSGSNTMENISSTFGQLVCQFTKGTKLSVLGLHQVPFSSKQHRNFGALAFPIVLSNQDEE 294
             G         TFGQ+ C   +  KLS+LG HQV  SS    + GA+  P+    +   
Sbjct: 239 EQGLTAPNRCFRTFGQVTCHILRSLKLSLLGCHQVLTSSSNLHSVGAITVPVSFLRRHTA 298

Query: 295 TEL--------VRERTTQVSAGSIAVMVESELDGFTKIGGWVEMNKLNPKSIQWAITMSD 346
           TE         +      VS+ SIA+ ++S +D  TK+GGW+E+     K ++W+++++D
Sbjct: 299 TEPEPSAPPLEMSRNMNHVSSSSIALKLDSLMDESTKLGGWIEIQNSREKQVKWSVSITD 358

Query: 347 VSEEDVLIFLDNLRAITMSDVSEDSFGWGMSLGGMIGDSASSDHFQAETYLKFNLGDKFC 406
             E++V                    GWGMS+GG++  S + D FQ E+YLKFN+GD+F 
Sbjct: 359 NPEDEV--------------------GWGMSVGGVVDGSRNHDQFQVESYLKFNIGDRFR 398

Query: 407 LKPGFAYVIDGSSKIGALMIRSNWSL 432
           L P   Y  +   +   LM++S+WSL
Sbjct: 399 LSPCLVYHTNSDGRTIGLMLKSHWSL 424