Miyakogusa Predicted Gene
- Lj1g3v3542610.4
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3542610.4 Non Chatacterized Hit- tr|I1N290|I1N290_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,72.99,0,seg,NULL;
domain in helicases and associated with SANT,HAS subgroup;
HSA,Helicase/SANT-associated, D,CUFF.30910.4
(893 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24880.1 | Symbols: | Helicase/SANT-associated, DNA binding ... 496 e-140
AT3G24870.1 | Symbols: | Helicase/SANT-associated, DNA binding ... 489 e-138
AT3G24870.2 | Symbols: | Helicase/SANT-associated, DNA binding ... 471 e-133
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 52 2e-06
>AT3G24880.1 | Symbols: | Helicase/SANT-associated, DNA binding
protein | chr3:9086457-9095537 REVERSE LENGTH=1957
Length = 1957
Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust.
Identities = 357/916 (38%), Positives = 485/916 (52%), Gaps = 83/916 (9%)
Query: 1 MHGCNSGFAFAVNAEVDSMXXXXXXXXXXXLKTSPCRAAVEEKAQGDIRQEYSIXXXXXX 60
MHG SG+ VNAEVDSM +KTSP R A+E KAQ ++RQEY +
Sbjct: 1 MHGSVSGYLL-VNAEVDSMGGVIDSGGGIGVKTSPRRTAIE-KAQAELRQEYDVREERRR 58
Query: 61 ELEFLEKGGNPLDYKLGNAASVSVQSTSLTDQHQELFVNSEAKGSFVLTASPHGDSVDSS 120
ELEFLEKGGNPLD+K G A S SVQSTSLTDQ E FVNSE K SF LTASPHGDSV+SS
Sbjct: 59 ELEFLEKGGNPLDFKFGIATSHSVQSTSLTDQQAEHFVNSEVKDSFALTASPHGDSVESS 118
Query: 121 VRPGAPSISEPNTADNLLLFDGENELAQGEKRSMHSKKRYNIAPSEQSSQIGGSQNAKET 180
RPG P+ISEPNTADNLLLFD EN+ +GE+ H ++ + SE+SS+ +QN KET
Sbjct: 119 GRPGVPTISEPNTADNLLLFDSENKSVEGERNLRHPNRQNRTSESERSSKAHTNQNTKET 178
Query: 181 EDSAIVRPYARRNRSRPNHGP---------------------RGGSRDVKGLLSDTNKHK 219
EDSAI RPYARRNRS+ + P R GS + KG + + K
Sbjct: 179 EDSAIFRPYARRNRSKISRDPARSSSTDLVQNRGGLATSISIRRGSVEGKGCIPEAANQK 238
Query: 220 DYHVPSGSKPKPSSLNGEIHIKDPTSNSPLNNELVGVRAHQSKSGSASVTEDKLGAMLNR 279
D H S S P ++ NG I K+ S++ LN ++ G V E G+ +
Sbjct: 239 DMHTTSVSCPVFANSNGNIVPKNRVSSNSLNTKV---------DGEPVVRESTAGSKTSL 289
Query: 280 NFKGNQHIVPSQDDTVQNPLVLASGDASAVGERDPGSSGDLKPPSCVVSALPGNESCPGL 339
K I S+ L G++ GE+ S P + ++ G ++
Sbjct: 290 -LKDEADISYSKSSA-----YLPVGESGLAGEKAQLVSTGGSPKAATIA---GQKNSSTQ 340
Query: 340 SNGFGNIKLDRRGVPDEGQNNSTSLGVKNFDSVSSCVPTSFAGDVNNESSICTSRSKADA 399
NG L V +E N + G +S SS + +V+NE + K D+
Sbjct: 341 LNG-----LRDSTVEEESLTNRGATGTNGLESESSHA-NNVEVNVDNERDLYKV-DKLDS 393
Query: 400 NGSTMEQTPEFEKKLNSIGCEVVKERSKTNTGESGATINNERASGYFNRFDGDNMVKSEE 459
+ +M++T E L+ E+ K + + TG+S I+ VK E
Sbjct: 394 DEISMQKTLRVEGLLDQTVGEMTKTKIEDETGQSTTIISECIPECEMQM----KSVKIEN 449
Query: 460 DIHIVSSCMQKKLNDFSNIKGMHPSNSCSISKDGKEENVVMKDHSNPIRGETCERLQVPS 519
H ++ MQ K K + + D K +++ ++ S+ + C + S
Sbjct: 450 QSHRSTAEMQTKEKSSETEKRLQ-DGLVVLENDSKVGSILSENPSSTL----CSGIPQAS 504
Query: 520 DLFTSATPRTALTENVTTAASDCQPSCKQPLKLADKAHEDSILEEAHIIEVKRKRISELS 579
+S T +L A QPS + D ED+ILEEA II+ K+KRI+ELS
Sbjct: 505 VDTSSCTVGNSLLSGTDIEALKHQPSSD--AVMLDTVKEDAILEEARIIQAKKKRIAELS 562
Query: 580 IRTLPSQIHHKSHWDFVLEEMAWLANDFAQERLWKIXXXXXXXXXXXXXXXXXFEKQSKH 639
T P ++ KS WDFVLEEMAWLANDFAQERLWK+ FE++++H
Sbjct: 563 CGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAAAQICHRVALTCQLRFEERNQH 622
Query: 640 VGMKILSHSIAKAVMQFWHSVELLLVRDNNCIGSSNESGQVDSNEASGDKTRSS-DMLQE 698
+K ++ ++ A++QFW SVE E G+ +S +++E
Sbjct: 623 RKLKKIASVLSNAILQFWSSVEA---------------------EVPGELEETSLGIVKE 661
Query: 699 SSKLLEGQNPKKRAALKVHAYALRFLKDSRSHGISSQAEAPATPDKISDSGIVDMSWEDH 758
+ + N ++ A V YA RFLK + S IS + AP+TPD + D I+D+S D
Sbjct: 662 TCQESNCLNGRRCLAAGVKEYASRFLKYNNS-SISYHSAAPSTPDNMCDPEILDISMVDQ 720
Query: 759 LSDESLFYTVPPTAMETYRKSIESHFTQCEKSFSSIQEEVETSMYDTAAEHGYEELVYDE 818
L++ SLFY+VP AME Y KSIESH T+CEKS SS+QEEV+TS YDTA + GY +DE
Sbjct: 721 LTEASLFYSVPSGAMEVYLKSIESHLTRCEKSGSSMQEEVDTSAYDTAGDIGYNVTAFDE 780
Query: 819 DEGETSTYYLPGVYEGSRLSKSGQKKHKNRIKSYTHRSNEVGTDLPYLHYQTGTQPSSLF 878
DEGETSTYYLPG +E SR KK KN +KS++ RS ++G DLPY++ G+ SSL
Sbjct: 781 DEGETSTYYLPGAFESSRSFNISHKKRKNLMKSHSARSYDLGDDLPYVNNTGGSNSSSLM 840
Query: 879 GKRPAS-LNVGTIPTK 893
KRP S +N G++PT+
Sbjct: 841 AKRPDSNINAGSVPTR 856
>AT3G24870.1 | Symbols: | Helicase/SANT-associated, DNA binding
protein | chr3:9075237-9084278 REVERSE LENGTH=1907
Length = 1907
Score = 489 bits (1258), Expect = e-138, Method: Compositional matrix adjust.
Identities = 357/920 (38%), Positives = 489/920 (53%), Gaps = 91/920 (9%)
Query: 1 MHGCNSGFAFAVNAEVDSMXXXXXXXXXXXLKTSPCRAAVEEKAQGDIRQEYSIXXXXXX 60
MHG SG+ VNAEVDSM +KTSP R A+E KAQ ++RQEY +
Sbjct: 1 MHGSVSGYLL-VNAEVDSMGGVIDSGGGIGVKTSPRRTAIE-KAQAELRQEYDVREERRR 58
Query: 61 ELEFLEKGGNPLDYKLGNAASVSVQSTSLTDQHQELFVNSEAKGSFVLTASPHGDSVDSS 120
ELEFLEKGGNPLD+K G A S SVQSTSLTDQ E FVNSE K SF LTASPHGDSV+SS
Sbjct: 59 ELEFLEKGGNPLDFKFGIATSHSVQSTSLTDQQAEHFVNSEVKDSFALTASPHGDSVESS 118
Query: 121 VRPGAPSISEPNTADNLLLFDGENELAQGEKRSMHSKKRYNIAPSEQSSQIGGSQNAKET 180
RPG P+ISEPNTADNLLLFD EN+ +GE+ H ++ + SE+SS+ +QN KET
Sbjct: 119 GRPGVPTISEPNTADNLLLFDSENKSVEGERNLRHPNRQNRTSESERSSKAHTNQNTKET 178
Query: 181 EDSAIVRPYARRNRSRPNHGP---------------------RGGSRDVKGLLSDTNKHK 219
EDSAI RPYARRNRS+ + P R GS + KG + + K
Sbjct: 179 EDSAIFRPYARRNRSKISRDPARSSSTDLVQNRGGLATSISIRRGSVEGKGCIPEAANQK 238
Query: 220 DYHVPSGSKPKPSSLNGEIHIKDPTSNSPLNNELVG---VRAHQSKSGS-ASVTEDKLGA 275
D H S S P ++ NG I K+ S++ LN ++ G VR +S +GS S+ +D+
Sbjct: 239 DMHTTSVSCPVFANSNGNIVPKNRVSSNSLNTKVDGEPVVR--ESTAGSKTSLLKDEADI 296
Query: 276 MLNRNFKGNQHIVPSQDDTVQNPLVLASGDASAVGERDPGSSGDLKPPSCVVSALPGNES 335
+++ L G++ GE+ S P + ++ G ++
Sbjct: 297 SYSKSSA-----------------YLPVGESGLAGEKAQLVSTGGSPKAATIA---GQKN 336
Query: 336 CPGLSNGFGNIKLDRRGVPDEGQNNSTSLGVKNFDSVSSCVPTSFAGDVNNESSICTSRS 395
NG L V +E N + G +S SS + +V+NE +
Sbjct: 337 SSTQLNG-----LRDSTVEEESLTNRGATGTNGLESESSHA-NNVEVNVDNERDLYKV-D 389
Query: 396 KADANGSTMEQTPEFEKKLNSIGCEVVKERSKTNTGESGATINNERASGYFNRFDGDNMV 455
K D++ +M++T E L+ E+ K + + TG+S I+ V
Sbjct: 390 KLDSDEISMQKTLRVEGLLDQTVGEMTKTKIEDETGQSTTIISECIPECEMQM----KSV 445
Query: 456 KSEEDIHIVSSCMQKKLNDFSNIKGMHPSNSCSISKDGKEENVVMKDHSNPIRGETCERL 515
K E H ++ MQ K K + + D K +++ ++ S+ + C +
Sbjct: 446 KIENQSHRSTAEMQTKEKSSETEKRLQ-DGLVVLENDSKVGSILSENPSSTL----CSGI 500
Query: 516 QVPSDLFTSATPRTALTENVTTAASDCQPSCKQPLKLADKAHEDSILEEAHIIEVKRKRI 575
S +S T +L A QPS + D ED+ILEEA II+ K+KRI
Sbjct: 501 PQASVDTSSCTVGNSLLSGTDIEALKHQPSSD--AVMLDTVKEDAILEEARIIQAKKKRI 558
Query: 576 SELSIRTLPSQIHHKSHWDFVLEEMAWLANDFAQERLWKIXXXXXXXXXXXXXXXXXFEK 635
+ELS T P ++ KS WDFVLEEMAWLANDFAQERLWK+ FE+
Sbjct: 559 AELSCGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAATQICHRVALTCQLRFEE 618
Query: 636 QSKHVGMKILSHSIAKAVMQFWHSVELLLVRDNNCIGSSNESGQVDSNEASGDKTRSS-D 694
+++H +K ++ ++ A++QFW SVE E G+ +S
Sbjct: 619 RNQHRKLKKIASVLSYAILQFWSSVEA---------------------EVPGELEETSLG 657
Query: 695 MLQESSKLLEGQNPKKRAALKVHAYALRFLKDSRSHGISSQAEAPATPDKISDSGIVDMS 754
+++E+ + N + A V YA RFLK + S IS + A +TPD + D I+D+S
Sbjct: 658 IVKETCQESNCLNGIRCLAAGVKEYASRFLKYNNS-SISYHSAALSTPDNMCDPEILDIS 716
Query: 755 WEDHLSDESLFYTVPPTAMETYRKSIESHFTQCEKSFSSIQEEVETSMYDTAAEHGYEEL 814
D L++ SLFY+VP AME Y KSIESH T+CEKS SS+QEEV+TS YDTA + GY
Sbjct: 717 MVDQLTEASLFYSVPSGAMEVYLKSIESHLTRCEKSGSSMQEEVDTSAYDTAGDIGYNVT 776
Query: 815 VYDEDEGETSTYYLPGVYEGSRLSKSGQKKHKNRIKSYTHRSNEVGTDLPYLHYQTGTQP 874
+DEDEGETSTYYLPG +E SR KK KN +KS++ RS ++G DLPY++ G+
Sbjct: 777 AFDEDEGETSTYYLPGAFESSRSFNISHKKRKNLMKSHSARSYDLGDDLPYVNNTGGSNS 836
Query: 875 SSLFGKRPAS-LNVGTIPTK 893
SSL KRP S +N G++PT+
Sbjct: 837 SSLIVKRPDSNINAGSVPTR 856
>AT3G24870.2 | Symbols: | Helicase/SANT-associated, DNA binding
protein | chr3:9075237-9084278 REVERSE LENGTH=1899
Length = 1899
Score = 471 bits (1213), Expect = e-133, Method: Compositional matrix adjust.
Identities = 348/920 (37%), Positives = 481/920 (52%), Gaps = 97/920 (10%)
Query: 1 MHGCNSGFAFAVNAEVDSMXXXXXXXXXXXLKTSPCRAAVEEKAQGDIRQEYSIXXXXXX 60
MHG SG+ VNAEVDSM +KTSP R A+E KAQ ++R
Sbjct: 1 MHGSVSGYLL-VNAEVDSMGGVIDSGGGIGVKTSPRRTAIE-KAQAELR-----TYDDKP 53
Query: 61 ELEFLEKGGNPLDYKLGNAASVSVQSTSLTDQHQELFVNSEAKGSFVLTASPHGDSVDSS 120
L +L +GGNPLD+K G A S SVQSTSLTDQ E FVNSE K SF LTASPHGDSV+SS
Sbjct: 54 LLFYLLQGGNPLDFKFGIATSHSVQSTSLTDQQAEHFVNSEVKDSFALTASPHGDSVESS 113
Query: 121 VRPGAPSISEPNTADNLLLFDGENELAQGEKRSMHSKKRYNIAPSEQSSQIGGSQNAKET 180
RPG P+ISEPNTADNLLLFD EN+ +GE+ H ++ + SE+SS+ +QN KET
Sbjct: 114 GRPGVPTISEPNTADNLLLFDSENKSVEGERNLRHPNRQNRTSESERSSKAHTNQNTKET 173
Query: 181 EDSAIVRPYARRNRSRPNHGP---------------------RGGSRDVKGLLSDTNKHK 219
EDSAI RPYARRNRS+ + P R GS + KG + + K
Sbjct: 174 EDSAIFRPYARRNRSKISRDPARSSSTDLVQNRGGLATSISIRRGSVEGKGCIPEAANQK 233
Query: 220 DYHVPSGSKPKPSSLNGEIHIKDPTSNSPLNNELVG---VRAHQSKSGS-ASVTEDKLGA 275
D H S S P ++ NG I K+ S++ LN ++ G VR +S +GS S+ +D+
Sbjct: 234 DMHTTSVSCPVFANSNGNIVPKNRVSSNSLNTKVDGEPVVR--ESTAGSKTSLLKDEADI 291
Query: 276 MLNRNFKGNQHIVPSQDDTVQNPLVLASGDASAVGERDPGSSGDLKPPSCVVSALPGNES 335
+++ L G++ GE+ S P + ++ G ++
Sbjct: 292 SYSKSSA-----------------YLPVGESGLAGEKAQLVSTGGSPKAATIA---GQKN 331
Query: 336 CPGLSNGFGNIKLDRRGVPDEGQNNSTSLGVKNFDSVSSCVPTSFAGDVNNESSICTSRS 395
NG L V +E N + G +S SS + +V+NE +
Sbjct: 332 SSTQLNG-----LRDSTVEEESLTNRGATGTNGLESESSHA-NNVEVNVDNERDLYKV-D 384
Query: 396 KADANGSTMEQTPEFEKKLNSIGCEVVKERSKTNTGESGATINNERASGYFNRFDGDNMV 455
K D++ +M++T E L+ E+ K + + TG+S I+ V
Sbjct: 385 KLDSDEISMQKTLRVEGLLDQTVGEMTKTKIEDETGQSTTIISECIPECEMQM----KSV 440
Query: 456 KSEEDIHIVSSCMQKKLNDFSNIKGMHPSNSCSISKDGKEENVVMKDHSNPIRGETCERL 515
K E H ++ MQ K K + + D K +++ ++ S+ + C +
Sbjct: 441 KIENQSHRSTAEMQTKEKSSETEKRLQ-DGLVVLENDSKVGSILSENPSSTL----CSGI 495
Query: 516 QVPSDLFTSATPRTALTENVTTAASDCQPSCKQPLKLADKAHEDSILEEAHIIEVKRKRI 575
S +S T +L A QPS + D ED+ILEEA II+ K+KRI
Sbjct: 496 PQASVDTSSCTVGNSLLSGTDIEALKHQPSSD--AVMLDTVKEDAILEEARIIQAKKKRI 553
Query: 576 SELSIRTLPSQIHHKSHWDFVLEEMAWLANDFAQERLWKIXXXXXXXXXXXXXXXXXFEK 635
+ELS T P ++ KS WDFVLEEMAWLANDFAQERLWK+ FE+
Sbjct: 554 AELSCGTAPVEVREKSQWDFVLEEMAWLANDFAQERLWKMTAATQICHRVALTCQLRFEE 613
Query: 636 QSKHVGMKILSHSIAKAVMQFWHSVELLLVRDNNCIGSSNESGQVDSNEASGDKTRSS-D 694
+++H +K ++ ++ A++QFW SVE E G+ +S
Sbjct: 614 RNQHRKLKKIASVLSYAILQFWSSVEA---------------------EVPGELEETSLG 652
Query: 695 MLQESSKLLEGQNPKKRAALKVHAYALRFLKDSRSHGISSQAEAPATPDKISDSGIVDMS 754
+++E+ + N + A V YA RFLK + S IS + A +TPD + D I+D+S
Sbjct: 653 IVKETCQESNCLNGIRCLAAGVKEYASRFLKYNNS-SISYHSAALSTPDNMCDPEILDIS 711
Query: 755 WEDHLSDESLFYTVPPTAMETYRKSIESHFTQCEKSFSSIQEEVETSMYDTAAEHGYEEL 814
D L++ SLFY+VP AME Y KSIESH T+CE S SS+QEEV+TS YDTA + GY
Sbjct: 712 MVDQLTEASLFYSVPSGAMEVYLKSIESHLTRCE-SGSSMQEEVDTSAYDTAGDIGYNVT 770
Query: 815 VYDEDEGETSTYYLPGVYEGSRLSKSGQKKHKNRIKSYTHRSNEVGTDLPYLHYQTGTQP 874
+DEDEGETSTYYLPG +E SR KK KN +KS++ RS ++G DLPY++ G+
Sbjct: 771 AFDEDEGETSTYYLPGAFESSRSFNISHKKRKNLMKSHSARSYDLGDDLPYVNNTGGSNS 830
Query: 875 SSLFGKRPAS-LNVGTIPTK 893
SSL KRP S +N G++PT+
Sbjct: 831 SSLIVKRPDSNINAGSVPTR 850
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 13/140 (9%)
Query: 590 KSHWDFVLEEMAWLANDFAQERLWKIXXXXXXXXXXX-----XXXXXXFEKQSKHVGMKI 644
K+HWD VLEEMAWL+ DF ER WK+ + + + ++
Sbjct: 45 KTHWDHVLEEMAWLSKDFESERKWKLAQAKKVALRASKGMLDQASREERKLKEEEQRLRK 104
Query: 645 LSHSIAKAVMQFWHSVELLLVRDNNCIGSSNESGQVDSNE--ASGDKTRSSDMLQESSKL 702
++ +I+K + +FW VE L++ + + + + +D G R S ML E+ L
Sbjct: 105 VALNISKDMKKFWMKVEKLVLYKHQLVRNEKKKKAMDKQLEFLLGQTERYSTMLAEN--L 162
Query: 703 LE----GQNPKKRAALKVHA 718
+E GQN + L + +
Sbjct: 163 VEPYKQGQNTPSKPLLTIES 182