Miyakogusa Predicted Gene
- Lj1g3v3531580.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3531580.1 CUFF.30826.1
(559 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 551 e-157
AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 347 2e-95
AT2G25270.1 | Symbols: | unknown protein; LOCATED IN: plasma me... 313 2e-85
AT1G80540.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 249 4e-66
AT5G67550.1 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 65 9e-11
>AT1G71110.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT2G12400.1); Has 173 Blast hits
to 169 proteins in 21 species: Archae - 0; Bacteria - 0;
Metazoa - 3; Fungi - 0; Plants - 165; Viruses - 0; Other
Eukaryotes - 5 (source: NCBI BLink). |
chr1:26818244-26820852 FORWARD LENGTH=557
Length = 557
Score = 551 bits (1420), Expect = e-157, Method: Compositional matrix adjust.
Identities = 272/504 (53%), Positives = 343/504 (68%), Gaps = 5/504 (0%)
Query: 29 SPSGSTRHAVNTILGEVNLDPWKTEVAQIALAPYPGVDSP-EGTLVLAANRTNRPDILQR 87
S +++ + ILG N WK I+LAP P D L+LAA+RT RPDIL+
Sbjct: 25 SSVSASQDPLRLILGSPNFGTWK---GGISLAPGPESDDVVSDYLLLAAHRTKRPDILRA 81
Query: 88 FRRYKGGWDIANRHYWASVGFTGAAGFILAVLWFISFGLALVIHSCCGWGINIKEEGSN- 146
F+ Y GGW+I N HYWASVGFTGA GFILAV+W +SFG LV++ C W I K +GS+
Sbjct: 82 FKPYHGGWNITNNHYWASVGFTGAPGFILAVIWLLSFGSLLVVYHCFKWRICDKAKGSSF 141
Query: 147 RLQRVCXXXXXXFTCTAVTGCVLLSFGQDKFHGEAIHTLHYVVNQSDYTVEILRNVTEYL 206
+R+C FTC A GC+LLS GQDKFH EA+HTL YVVNQSDYTVEIL+NVT+YL
Sbjct: 142 DTRRICFILLIVFTCVAAVGCILLSVGQDKFHTEAMHTLKYVVNQSDYTVEILQNVTQYL 201
Query: 207 SLAKSITVAEMFLPSDIMNDIDNLNGDLKAAADTLYEKTHENSIKIRKVFDTVXXXXXXX 266
SLAK+I V ++ +PSD+M +ID LN +L AA TL E T +N+ KI++VF V
Sbjct: 202 SLAKTINVTQIVIPSDVMGEIDKLNVNLNTAAVTLGETTTDNAAKIKRVFYAVRSALITV 261
Query: 267 XXXXXXXXXXXXXXXXXXYQHAILIFVISGWLLVVTTFILCGVFMLLNNAISDTCLAMGE 326
+QH + IFV+SGW+LV TF+LCGVF++LNNAISDTC+AM E
Sbjct: 262 ATVMLILSFVGLLLSVLRHQHVVHIFVVSGWILVAVTFVLCGVFLILNNAISDTCVAMKE 321
Query: 327 WEENPQAESTLRNILPCVDQGTTNRTLFQSKQVVTNIVSVVNRFIYSTADANPSQGSMNY 386
W +NP AE+ L +ILPCVDQ TTN+TL QSK V+ +IV+VVN F+Y+ A+ NP+ G Y
Sbjct: 322 WVDNPHAETALSSILPCVDQQTTNQTLSQSKVVINSIVTVVNTFVYAVANTNPAPGQDRY 381
Query: 387 YNQSGPAMPPLCYPFDSEFKERQCTTQEVSSFNASSVWKKYECEVSEYGICTSVGRVTPE 446
YNQSGP MPPLC PFD+ ++RQC+ E+S NASSVW+ Y+CEV+ GICT+VGRVTP+
Sbjct: 382 YNQSGPPMPPLCIPFDANMEDRQCSPWELSIENASSVWENYKCEVTPSGICTTVGRVTPD 441
Query: 447 IYLELVAAVNEIYALEHYTPLVLSLQNCNFVRDTFKEIISSYCPPLNHYINVINEXXXXX 506
+ +LVAAVNE YALEHYTP +LS ++CNFVR+TF I S YCPPL + ++N
Sbjct: 442 TFGQLVAAVNESYALEHYTPPLLSFRDCNFVRETFMSITSDYCPPLVRNLRIVNAGLGLI 501
Query: 507 XXXXXXXXXXXXXYANRPQREEVF 530
YANRPQREEVF
Sbjct: 502 SVGVLLCLVLWIFYANRPQREEVF 525
>AT2G12400.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: 25 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G25270.1);
Has 177 Blast hits to 172 proteins in 23 species: Archae
- 0; Bacteria - 2; Metazoa - 3; Fungi - 0; Plants - 164;
Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
| chr2:5005144-5008140 REVERSE LENGTH=541
Length = 541
Score = 347 bits (889), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 179/448 (39%), Positives = 256/448 (57%), Gaps = 5/448 (1%)
Query: 50 WKTEVAQIALAPYPGVDSPEGTLVLAANRTNRPDILQRFRRYKGGWDIANRHYWASVGFT 109
W+T V + +A G +S +L+LAA RT R D F+ Y GGW+I+N HY SVG+T
Sbjct: 46 WRTSVIERVIAEESGENS---SLILAAKRTRRKDPADNFKLYTGGWNISNSHYLTSVGYT 102
Query: 110 GAAGFILAVLWFISFGLALVIHSCCGWGINIKEEGSNRLQ-RVCXXXXXXFTCTAVTGCV 168
A I+A++WF+ FGL+L + C + G +R+ + FT A+ GCV
Sbjct: 103 AAPFIIIALVWFVFFGLSLSLICLCYCCCARQSYGYSRVAYALSLILLISFTIAAIIGCV 162
Query: 169 LLSFGQDKFHGEAIHTLHYVVNQSDYTVEILRNVTEYLSLAKSITVAEMFLPSDIMNDID 228
L GQ KFH TL YVV+Q++ T E LRNV++YL+ AK + V LP D+++ ID
Sbjct: 163 FLYTGQGKFHASTTDTLDYVVSQANLTSENLRNVSDYLNAAKKVDVQSSILPQDVLSSID 222
Query: 229 NLNGDLKAAADTLYEKTHENSIKIRKVFDTVXXXXXXXXXXXXXXXXXXXXXXXXXYQHA 288
N+ G + ++A TL KT EN KI+ V D + Q
Sbjct: 223 NIQGKINSSATTLSVKTMENQDKIQNVLDIMRLALVIIAAVMLFLAFIGFLLSIFGLQCL 282
Query: 289 ILIFVISGWLLVVTTFILCGVFMLLNNAISDTCLAMGEWEENPQAESTLRNILPCVDQGT 348
+ VI GW+LV TF+LCG F+LL+N + DTC+AM +W +NP A + L +ILPCVD T
Sbjct: 283 VYTLVILGWILVTVTFVLCGGFLLLHNVVGDTCVAMDQWVQNPTAHTALDDILPCVDNAT 342
Query: 349 TNRTLFQSKQVVTNIVSVVNRFIYSTADAN-PSQGSMNYYNQSGPAMPPLCYPFDSEFKE 407
TL ++K V +V++++ I + + N P Q YYNQSGP MP LC PF+++ +
Sbjct: 343 ARETLTRTKLVTYQLVNLLDNAISNMTNRNFPPQFRPLYYNQSGPLMPLLCNPFNADLSD 402
Query: 408 RQCTTQEVSSFNASSVWKKYECEVSEYGICTSVGRVTPEIYLELVAAVNEIYALEHYTPL 467
RQC +V NA+ VWK + C++ G C++ GR+TP++Y ++ AAVN Y L Y P
Sbjct: 403 RQCQPGQVHLNNATEVWKNFTCQIVTPGTCSTPGRLTPKLYSQMAAAVNVSYGLYKYGPF 462
Query: 468 VLSLQNCNFVRDTFKEIISSYCPPLNHY 495
+ LQ C+FVR TF +I +CP L Y
Sbjct: 463 LADLQGCDFVRSTFTDIERDHCPGLKRY 490
>AT2G25270.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 18 plant structures; EXPRESSED
DURING: 13 growth stages; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G12400.1);
Has 35333 Blast hits to 34131 proteins in 2444 species:
Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi -
991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610
(source: NCBI BLink). | chr2:10759779-10762358 FORWARD
LENGTH=545
Length = 545
Score = 313 bits (803), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 159/451 (35%), Positives = 250/451 (55%), Gaps = 6/451 (1%)
Query: 51 KTEVAQIALAPYPGVDSPE----GTLVLAANRTNRPDILQRFRRYKGGWDIANRHYWASV 106
K VA+ L G ++P+ ++ LAA RT R D L F +Y GGW+I+N+HYWASV
Sbjct: 45 KFIVAEAPLLGPAGFNNPQVIEVASVALAAQRTYRKDPLNGFEKYTGGWNISNQHYWASV 104
Query: 107 GFTGAAGFILAVLWFISFGLALVIHSCCGWGINIKEEGSNRLQRVCXXX-XXXFTCTAVT 165
+T F+LA +WF+ FG+ L++ C G +++ V FT A+
Sbjct: 105 SYTAVPLFVLAAVWFLGFGICLLVICMCHICHRTNSVGYSKVAYVVSLIFLLIFTVIAII 164
Query: 166 GCVLLSFGQDKFHGEAIHTLHYVVNQSDYTVEILRNVTEYLSLAKSITVAEMFLPSDIMN 225
GCVLL GQ +++ TL YV++Q+D T+ LR +++YL+ AK V ++ LP+++
Sbjct: 165 GCVLLYSGQIRYNKSTTETLEYVMSQADSTISQLRAISDYLASAKQAAVLQVLLPANVQT 224
Query: 226 DIDNLNGDLKAAADTLYEKTHENSIKIRKVFDTVXXXXXXXXXXXXXXXXXXXXXXXXXY 285
+ID + L ++ T+ EK+ +S IR D+V
Sbjct: 225 EIDQIGVKLDSSVATITEKSTNSSNHIRHFLDSVRVALIVVSIVMLVVTFLGLVSSIFGM 284
Query: 286 QHAILIFVISGWLLVVTTFILCGVFMLLNNAISDTCLAMGEWEENPQAESTLRNILPCVD 345
Q + VI GW+LV TFIL G F++L+NA +DTC+AM EW E P + + L ILPC D
Sbjct: 285 QVIVYTLVILGWILVTGTFILSGTFLVLHNATADTCVAMSEWVERPSSNTALDEILPCTD 344
Query: 346 QGTTNRTLFQSKQVVTNIVSVVNRFIYSTADANPSQGSM-NYYNQSGPAMPPLCYPFDSE 404
T TL +S++V +V ++N I + ++ N S + YYNQSGP +P LC PF+ +
Sbjct: 345 NATAQETLMRSREVTGQLVELINTVITNVSNINFSPVFVPMYYNQSGPLLPLLCNPFNHD 404
Query: 405 FKERQCTTQEVSSFNASSVWKKYECEVSEYGICTSVGRVTPEIYLELVAAVNEIYALEHY 464
+R C+ ++ NA+ W + C+VS+ G CT+ GR+TP +Y ++ + VN L
Sbjct: 405 LTDRSCSPGDLDLNNATEAWTSFVCQVSQNGTCTTTGRLTPALYSQMASGVNISTGLIRD 464
Query: 465 TPLVLSLQNCNFVRDTFKEIISSYCPPLNHY 495
P ++ LQ+C++ + TF++I + +CP L Y
Sbjct: 465 APFLVQLQDCSYAKQTFRDITNDHCPGLQRY 495
>AT1G80540.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT2G12400.1); Has 175 Blast hits to 171 proteins
in 20 species: Archae - 0; Bacteria - 0; Metazoa - 2;
Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes -
2 (source: NCBI BLink). | chr1:30281638-30284258 REVERSE
LENGTH=538
Length = 538
Score = 249 bits (636), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 143/430 (33%), Positives = 214/430 (49%), Gaps = 10/430 (2%)
Query: 72 LVLAANRTNRPDILQRFRRYKGGWDIANRHYWASVGFTGAAGFILAVLWFISFGLALVIH 131
LVLAA RT RPD L F Y GW++ N HY ASVGF+ ++A+ WF+ GL L+
Sbjct: 64 LVLAAERTQRPDPLNHFNIYVDGWNVTNSHYIASVGFSAVPFIVIAIAWFVLLGLFLICS 123
Query: 132 SCCGWGINIKEEGSNRLQRVCXXXXXXF----TCTAVTGCVLLSFGQDKFHGEAIHTLHY 187
C RVC F T AV G +L GQ++F+G T Y
Sbjct: 124 CLCCCCCGCGRRNYG-YSRVCYTLSLVFLLLFTIAAVIGSAMLYTGQNEFYGSVERTFMY 182
Query: 188 VVNQSDYTVEILRNVTEYLSLAKSITV-AEMFLPSDIMNDIDNLNGDLKAAADTLYEKTH 246
+V Q+ + L ++ + + AK I + P + +ID+ N +K + T ++
Sbjct: 183 IVKQATGVLTKLTSLWDSIQSAKDIQLDGHNLFPPEFRGNIDHFNNMIKMSNITYPDRVA 242
Query: 247 ENSIK-IRKVFDTVXXXXXXXXXXXXXXXXXXXXXXXXXYQHAILIFVISGWLLVVTTFI 305
+I+ + + V + + + VI GW+LV T +
Sbjct: 243 NQTIRYLTGALNPVRYVLNVIAGVMLAVAFLGLLFSFCGLRVLVYLLVILGWILVTATIL 302
Query: 306 LCGVFMLLNNAISDTCLAMGEWEENPQAESTLRNILPCVDQGTTNRTLFQSKQVVTNIVS 365
L VF++ +N ++DTC+AM +W +P A+S L +LPC+D T TL +K + V
Sbjct: 303 LSAVFLVFHNVVADTCMAMDQWVHDPAADSALSQLLPCLDPKTIGETLDITKTMTATAVD 362
Query: 366 VVNRFIY--STADANPSQGSMNYYNQSGPAMPPLCYPFDSEFKERQCTTQEVSSFNASSV 423
+ N + S D P Y+NQSGP +P LC P D K R C EV NAS V
Sbjct: 363 MTNAYTVNVSNHDQFPPNAPF-YHNQSGPLVPLLCNPLDQNHKPRPCAPDEVLLANASQV 421
Query: 424 WKKYECEVSEYGICTSVGRVTPEIYLELVAAVNEIYALEHYTPLVLSLQNCNFVRDTFKE 483
+K Y C+V+ GICT+ GR+T Y +++ A+N + L+HY P + S+ +C FVRDTF++
Sbjct: 422 YKGYICQVNAEGICTTQGRLTQGSYDQMMGAINVAFTLDHYGPFLASIADCTFVRDTFRD 481
Query: 484 IISSYCPPLN 493
I + CP L+
Sbjct: 482 ITTKNCPGLS 491
>AT5G67550.1 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; LOCATED IN: endomembrane
system; EXPRESSED IN: flower; EXPRESSED DURING: 4
anthesis; BEST Arabidopsis thaliana protein match is:
unknown protein (TAIR:AT1G71110.1); Has 161 Blast hits
to 154 proteins in 16 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 161; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr5:26946908-26949112 REVERSE LENGTH=509
Length = 509
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 89/202 (44%), Gaps = 8/202 (3%)
Query: 297 WLLVVTTFILCGVFMLLNNAISDTCLAMGEWEENPQAESTLRNILPCVDQGTTNRTLFQS 356
W++ ++L G ++ D C A + +NP+ STL N+ PC+D +++TL +
Sbjct: 255 WIITTLCWVLTGFDFFIHTFAEDLCSAFNGFVQNPR-NSTLTNLFPCMDPLHSDKTLIEI 313
Query: 357 KQVVTNIVSVVNRFIYSTADANPSQGSMNYYNQSGPAMPPLCYPFDSE----FKERQCTT 412
++ N ++ +N + + +N N + + P +C PF + + + C+
Sbjct: 314 SLMIHNFITQLNSKVAESMRSNALTDRSNTVSWA-PESGIICDPFVGQQINSYTPQSCSN 372
Query: 413 QEVSSFNASSVWKKYECEVSE-YGICTSVGRVTPE-IYLELVAAVNEIYALEHYTPLVLS 470
+ ++ ++ C + C G+ PE YL++ A N + P +
Sbjct: 373 GAIPIGEFPNILSRFTCHDKDPPETCRITGKFIPEAAYLKVYAYSNSAQGMLDILPSFQN 432
Query: 471 LQNCNFVRDTFKEIISSYCPPL 492
L C V+DT I+S+ C P
Sbjct: 433 LTECLAVKDTLSSIVSNQCDPF 454
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 78 RTNRPDILQRFRRYKGGWDIANRHYWASVGFTGAAGFILAVLWFISFGLALVIHSCCG 135
R R D L FR Y GG+++ N+HYWA+ FTG G+ +A G+ +++ C G
Sbjct: 36 RFKRRDPLNSFRYYDGGFNVRNKHYWAATAFTGIHGYAVA-------GVLIIVGICLG 86