Miyakogusa Predicted Gene
- Lj1g3v3529490.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3529490.1 NODE_42364_length_1842_cov_34.508144.path1.1
(424 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G24800.1 | Symbols: PRT1 | proteolysis 1 | chr3:9055653-90577... 304 7e-83
AT1G18660.1 | Symbols: | zinc finger (C3HC4-type RING finger) f... 60 2e-09
AT1G18660.3 | Symbols: | zinc finger (C3HC4-type RING finger) f... 60 2e-09
AT1G18660.2 | Symbols: | zinc finger (C3HC4-type RING finger) f... 60 2e-09
AT1G18660.4 | Symbols: | zinc finger (C3HC4-type RING finger) f... 60 3e-09
AT2G42030.1 | Symbols: | RING/U-box superfamily protein | chr2:... 50 4e-06
>AT3G24800.1 | Symbols: PRT1 | proteolysis 1 | chr3:9055653-9057795
FORWARD LENGTH=410
Length = 410
Score = 304 bits (779), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 179/417 (42%), Positives = 242/417 (58%), Gaps = 48/417 (11%)
Query: 1 MENSEFKDEIMDIDHGETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQC 60
M+N E ++E E PD F C VCL+LLYKPIVLSCGH+ CFWCV+KSMN RES C
Sbjct: 10 MKNDESQEE-------EIPDQFLCCVCLELLYKPIVLSCGHLSCFWCVHKSMNGFRESHC 62
Query: 61 PICRHQYYHFPTVCQMLHFLLLKVYPVAYTRRINQTLEEEKKSGFYSPEFDPDTCESQAK 120
PICR Y HFP+VCQ L+FLL K+YP+A+ +R Q L+EE++ +SP+ D
Sbjct: 63 PICRDPYVHFPSVCQKLYFLLKKMYPLAHKKREEQVLKEEQERECFSPQID--------- 113
Query: 121 FGHXXXXXXXXITHLVPSLCNVGTSEGMEQSKSTNHEGDDGTIHSKRSSIGEAEIIGTPI 180
++ NV + +E+ + + + I + + T
Sbjct: 114 -------LVLDLSVCSGDSLNVSDKQKVEECSNAANLLSSSSSRGDIPCIPKNQ-EPTDA 165
Query: 181 KGQKSSQDELCPPQKLSVA----DVMCIMCKQLLCQPVVLNCGHVYCETCVIKLAD--EM 234
K ++EL K+S D++C CK+LL +PVVLNCGHVYCE CV+ +A+ E
Sbjct: 166 KALNVHENELLKDNKVSKQISKDDLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEESEK 225
Query: 235 LRCQVCQSPHPRGFPKVCLEFDQFLEEQFPEEYKWRRDAIELR---------QIKVKPET 285
++CQ C PRGFPKVCL +Q LEE FPEEY R ++ Q +K E
Sbjct: 226 IKCQECNVCDPRGFPKVCLILEQLLEENFPEEYNSRSSKVQKTLAHNSKGNIQSYLK-EG 284
Query: 286 PSSCSSNNHNKGEKIEFWSDPESKVHIGVGCDFCGMYPIIGDRYKCEDCKEKMGFDLCGD 345
PS + NN++ + ++P S VH G GCD CG+YPIIGDRY+C+DCKE++G+DLC D
Sbjct: 285 PSLSNDNNNDD----PWLANPGSNVHFGAGCDSCGVYPIIGDRYRCKDCKEEIGYDLCKD 340
Query: 346 CYDTRSKLPGRFNQQHTSEHRFKLVQ-PNVIRNIMLRLVTGQLGDSSIVNESLENLE 401
CY+T SK+PGRFNQQHT +HR +L + P V+ N G L I NE ++ E
Sbjct: 341 CYETPSKVPGRFNQQHTPDHRLELARSPQVLINFN---SIGILLGPVISNEGMDTDE 394
>AT1G18660.1 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr1:6421433-6425565 FORWARD LENGTH=486
Length = 486
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 11 MDIDHG--ETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQCPICRHQYY 68
M HG E D F C+VCL LLY+P CGH C C+++SM+ R ++CP+CR +
Sbjct: 181 MRKTHGMAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMD--RGNKCPLCRTVIF 238
Query: 69 HFPTVCQM---LHFLLLKVYPVAYTRR 92
P C + L+ ++ K +P Y R
Sbjct: 239 MTPRTCAVSVTLNNIIEKNFPEEYAER 265
>AT1G18660.3 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr1:6421433-6425565 FORWARD LENGTH=486
Length = 486
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 11 MDIDHG--ETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQCPICRHQYY 68
M HG E D F C+VCL LLY+P CGH C C+++SM+ R ++CP+CR +
Sbjct: 181 MRKTHGMAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMD--RGNKCPLCRTVIF 238
Query: 69 HFPTVCQM---LHFLLLKVYPVAYTRR 92
P C + L+ ++ K +P Y R
Sbjct: 239 MTPRTCAVSVTLNNIIEKNFPEEYAER 265
>AT1G18660.2 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr1:6421433-6425565 FORWARD LENGTH=486
Length = 486
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 11 MDIDHG--ETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQCPICRHQYY 68
M HG E D F C+VCL LLY+P CGH C C+++SM+ R ++CP+CR +
Sbjct: 181 MRKTHGMAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMD--RGNKCPLCRTVIF 238
Query: 69 HFPTVCQM---LHFLLLKVYPVAYTRR 92
P C + L+ ++ K +P Y R
Sbjct: 239 MTPRTCAVSVTLNNIIEKNFPEEYAER 265
>AT1G18660.4 | Symbols: | zinc finger (C3HC4-type RING finger)
family protein | chr1:6421433-6425489 FORWARD LENGTH=491
Length = 491
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 7/87 (8%)
Query: 11 MDIDHG--ETPDSFCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRESQCPICRHQYY 68
M HG E D F C+VCL LLY+P CGH C C+++SM+ R ++CP+CR +
Sbjct: 181 MRKTHGMAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMD--RGNKCPLCRTVIF 238
Query: 69 HFPTVCQM---LHFLLLKVYPVAYTRR 92
P C + L+ ++ K +P Y R
Sbjct: 239 MTPRTCAVSVTLNNIIEKNFPEEYAER 265
>AT2G42030.1 | Symbols: | RING/U-box superfamily protein |
chr2:17539069-17540346 REVERSE LENGTH=425
Length = 425
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 1 MENSEFKDEIMDIDHGETPDS--FCCSVCLDLLYKPIVLSCGHMCCFWCVYKSMNCLRES 58
M +E D++ D F C +CLDL P+V +CGH+ C+ C+Y+ +
Sbjct: 116 MAEDNVTEEKRDVEKSVGSDGSFFDCYICLDLSKDPVVTNCGHLYCWSCLYQWLQVSEAK 175
Query: 59 QCPICRHQ 66
+CP+C+ +
Sbjct: 176 ECPVCKGE 183