Miyakogusa Predicted Gene

Lj1g3v3508280.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3508280.2 Non Chatacterized Hit- tr|A5BTA1|A5BTA1_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,50,0.00000000000008,DUF3685,Uncharacterised protein family
Ycf55,CUFF.30812.2
         (270 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48830.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   261   5e-70
AT5G48830.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   249   1e-66

>AT5G48830.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:19800269-19802625 REVERSE LENGTH=511
          Length = 511

 Score =  261 bits (666), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 134/266 (50%), Positives = 182/266 (68%), Gaps = 3/266 (1%)

Query: 8   FSDVIQRSCHSICATWLEKECFLLKGKTDKDLTTMILQKVKGDSTIVQNITKSGKKDLYS 67
           F+ +++ +  + C  WL++E ++    +D  +T ++++ +     I   I KSGK+DL++
Sbjct: 230 FTQIVREAYQAACTAWLKEELYVENTDSDNAITPLLIRMLNEKDAIFDKIRKSGKEDLFA 289

Query: 68  ELLWYLTFGLLREDCYYDSCVFALHGISIWEDLIRALAEGVASLYLEFISVDSDVSSKTN 127
           E L++  FG   +   YD   F  HG++I ED +  LA+GVAS+YLE ISVDS  S++ N
Sbjct: 290 EFLYFHKFGSPGKAFCYDLSFFRTHGVAILEDFMITLADGVASIYLELISVDSKFSNEMN 349

Query: 128 GLDVSFCALSTRELQKLRNEVALNQWLHHYMDTVVSMYEDRFDLCILDSQPI-ELENS-Q 185
              +S C+LS+R LQKLRNEVAL QWLH  ++ VVSMYEDRFDL IL +Q I  L+ S  
Sbjct: 350 SGGLSICSLSSRALQKLRNEVALYQWLHQNLEAVVSMYEDRFDLYILQTQVINNLDGSDD 409

Query: 186 TEKQSWWKRLTQQNSKTM-SPELHCIVISLFSMPIKRTKELRALTGWRYYFSLFLELSDI 244
           TE  SWW++ T   +K   S  L   +IS FS+P+KRTKEL+AL+GWRYYFSLFLELSDI
Sbjct: 410 TESLSWWRKFTLGKTKAAPSSPLRYSIISDFSLPVKRTKELKALSGWRYYFSLFLELSDI 469

Query: 245 TMPLIRAVVDKASEAISFFLVSLIGR 270
            MP+IR V+DK S  ISFFLV+LIGR
Sbjct: 470 GMPIIRVVLDKVSSVISFFLVTLIGR 495


>AT5G48830.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages. | chr5:19800269-19802625 REVERSE
           LENGTH=517
          Length = 517

 Score =  249 bits (636), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 134/273 (49%), Positives = 182/273 (66%), Gaps = 11/273 (4%)

Query: 8   FSDVIQRSCHSICATWLEKECFLLKGKTDKDL-------TTMILQKVKGDSTIVQNITKS 60
           F+ +++ +  + C  WL++E ++    +D +L       T ++++ +     I   I KS
Sbjct: 230 FTQIVREAYQAACTAWLKEELYVENTDSDNNLARDLQAITPLLIRMLNEKDAIFDKIRKS 289

Query: 61  GKKDLYSELLWYLTFGLLREDCYYDSCVFALHGISIWEDLIRALAEGVASLYLEFISVDS 120
           GK+DL++E L++  FG   +   YD   F  HG++I ED +  LA+GVAS+YLE ISVDS
Sbjct: 290 GKEDLFAEFLYFHKFGSPGKAFCYDLSFFRTHGVAILEDFMITLADGVASIYLELISVDS 349

Query: 121 DVSSKTNGLDVSFCALSTRELQKLRNEVALNQWLHHYMDTVVSMYEDRFDLCILDSQPI- 179
             S++ N   +S C+LS+R LQKLRNEVAL QWLH  ++ VVSMYEDRFDL IL +Q I 
Sbjct: 350 KFSNEMNSGGLSICSLSSRALQKLRNEVALYQWLHQNLEAVVSMYEDRFDLYILQTQVIN 409

Query: 180 ELENS-QTEKQSWWKRLTQQNSKTM-SPELHCIVISLFSMPIKRTKELRALTGWRYYFSL 237
            L+ S  TE  SWW++ T   +K   S  L   +IS FS+P+KRTKEL+AL+GW YYFSL
Sbjct: 410 NLDGSDDTESLSWWRKFTLGKTKAAPSSPLRYSIISDFSLPVKRTKELKALSGW-YYFSL 468

Query: 238 FLELSDITMPLIRAVVDKASEAISFFLVSLIGR 270
           FLELSDI MP+IR V+DK S  ISFFLV+LIGR
Sbjct: 469 FLELSDIGMPIIRVVLDKVSSVISFFLVTLIGR 501