Miyakogusa Predicted Gene

Lj1g3v3508280.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3508280.1 tr|B9GNJ5|B9GNJ5_POPTR Predicted protein
(Fragment) OS=Populus trichocarpa GN=POPTRDRAFT_851473
PE=4,48.15,2e-16, ,CUFF.30812.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G48830.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    73   6e-14
AT5G48830.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    73   6e-14

>AT5G48830.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages; Has 30201 Blast hits to 17322 proteins in
           780 species: Archae - 12; Bacteria - 1396; Metazoa -
           17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other
           Eukaryotes - 2996 (source: NCBI BLink). |
           chr5:19800269-19802625 REVERSE LENGTH=511
          Length = 511

 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 6/123 (4%)

Query: 26  SRHSANFSTVGR-KYSRNGCQFLHFSSWKTCELSVFRAIDLKITPCMRTIPLKCTGLGAL 84
           S  ++ FST  R K+S+  C+ +   S K  + +V  +++L  +        KCT   +L
Sbjct: 22  SSQTSCFSTNPRVKFSQRSCKIV---SRKAYKFNVSTSLNLGSSCSQGDSTCKCTCFASL 78

Query: 85  VDFNGAASSGLVPVVDQVLLMGSIFLTYMAGVIPVEKSYTNYQKIDSDKNVFPE--SSDN 142
            DF+G A SG VP+ DQVLL  SIFLTYMAGVIPV+K+ T      +     PE  +S +
Sbjct: 79  ADFDGVAGSGWVPIGDQVLLTASIFLTYMAGVIPVQKTSTYSSGKSTIVEEIPEVGTSKS 138

Query: 143 SGR 145
           SGR
Sbjct: 139 SGR 141


>AT5G48830.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast;
           EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13
           growth stages. | chr5:19800269-19802625 REVERSE
           LENGTH=517
          Length = 517

 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 50/123 (40%), Positives = 70/123 (56%), Gaps = 6/123 (4%)

Query: 26  SRHSANFSTVGR-KYSRNGCQFLHFSSWKTCELSVFRAIDLKITPCMRTIPLKCTGLGAL 84
           S  ++ FST  R K+S+  C+ +   S K  + +V  +++L  +        KCT   +L
Sbjct: 22  SSQTSCFSTNPRVKFSQRSCKIV---SRKAYKFNVSTSLNLGSSCSQGDSTCKCTCFASL 78

Query: 85  VDFNGAASSGLVPVVDQVLLMGSIFLTYMAGVIPVEKSYTNYQKIDSDKNVFPE--SSDN 142
            DF+G A SG VP+ DQVLL  SIFLTYMAGVIPV+K+ T      +     PE  +S +
Sbjct: 79  ADFDGVAGSGWVPIGDQVLLTASIFLTYMAGVIPVQKTSTYSSGKSTIVEEIPEVGTSKS 138

Query: 143 SGR 145
           SGR
Sbjct: 139 SGR 141