Miyakogusa Predicted Gene
- Lj1g3v3478240.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj1g3v3478240.1 Non Chatacterized Hit- tr|I3S0C9|I3S0C9_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,no
description,Tetratricopeptide-like helical; GLR1902 PROTEIN,NULL;
TETRATRICOPEPTIDE REPEAT PROTEI,CUFF.30809.1
(185 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48850.1 | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-l... 281 2e-76
AT1G04770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 260 3e-70
AT3G51280.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 251 2e-67
AT4G20900.1 | Symbols: MS5, TDM1 | Tetratricopeptide repeat (TPR... 216 6e-57
AT5G44330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like su... 181 3e-46
AT5G22794.2 | Symbols: | FUNCTIONS IN: molecular_function unkno... 95 3e-20
AT5G22794.1 | Symbols: | FUNCTIONS IN: molecular_function unkno... 75 4e-14
>AT5G48850.1 | Symbols: ATSDI1 | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:19805576-19807699 REVERSE
LENGTH=306
Length = 306
Score = 281 bits (718), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 134/178 (75%), Positives = 155/178 (87%), Gaps = 2/178 (1%)
Query: 10 SNYNYNCSKG--KKDDSYHVLHKVPYGDTPYVRAKHAQLVEKDPEGAIALFWRAINTGDK 67
+NYN + K D+ +HV+HKVP GDTPYVRAKHAQL+EK+PE AI FW+AINTGD+
Sbjct: 10 NNYNNSIKSNLMKDDELFHVIHKVPCGDTPYVRAKHAQLIEKNPEMAIVWFWKAINTGDR 69
Query: 68 VDSALKDMAVVMKQLDRSEEAIEAICSFRGLCSKQSQESLDNVLIDLYKKCGKIDEQIEL 127
VDSALKDMAVVMKQLDRSEEAIEAI SFR CSK SQ+SLDNVLIDLYKKCG+++EQ+EL
Sbjct: 70 VDSALKDMAVVMKQLDRSEEAIEAIKSFRPRCSKNSQDSLDNVLIDLYKKCGRMEEQVEL 129
Query: 128 LKRKLKLIYEGEAFNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKMNYVMAE 185
LKRKL+ IY+GEAFNGK TKTARSHGKKFQV+++QE SRLLGNLGWAYMQ+ Y+ AE
Sbjct: 130 LKRKLRQIYQGEAFNGKPTKTARSHGKKFQVTVQQEISRLLGNLGWAYMQQAKYLSAE 187
>AT1G04770.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:1336564-1337767 REVERSE
LENGTH=303
Length = 303
Score = 260 bits (665), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 123/171 (71%), Positives = 150/171 (87%), Gaps = 4/171 (2%)
Query: 19 GKKDDS----YHVLHKVPYGDTPYVRAKHAQLVEKDPEGAIALFWRAINTGDKVDSALKD 74
G++ DS Y+V+HK+P+GD+PYVRAKH QLVEKD E AI LFW AI D+VDSALKD
Sbjct: 10 GERQDSSAAAYNVVHKLPHGDSPYVRAKHVQLVEKDAEAAIELFWIAIKARDRVDSALKD 69
Query: 75 MAVVMKQLDRSEEAIEAICSFRGLCSKQSQESLDNVLIDLYKKCGKIDEQIELLKRKLKL 134
MA++MKQ +R+EEAI+AI SFR LCS+Q+QESLDNVLIDLYKKCG+I+EQ+ELLK+KL +
Sbjct: 70 MALLMKQQNRAEEAIDAIQSFRDLCSRQAQESLDNVLIDLYKKCGRIEEQVELLKQKLWM 129
Query: 135 IYEGEAFNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKMNYVMAE 185
IY+GEAFNGK TKTARSHGKKFQV++++ETSR+LGNLGWAYMQ M+Y AE
Sbjct: 130 IYQGEAFNGKPTKTARSHGKKFQVTVEKETSRILGNLGWAYMQLMDYTAAE 180
>AT3G51280.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:19037229-19038781 FORWARD
LENGTH=430
Length = 430
Score = 251 bits (640), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 117/165 (70%), Positives = 141/165 (85%)
Query: 21 KDDSYHVLHKVPYGDTPYVRAKHAQLVEKDPEGAIALFWRAINTGDKVDSALKDMAVVMK 80
+ +S+H +HKVP GD+PYVRAK+ QLVEKDPE AI LFW+AIN GD+VDSALKDMA+VMK
Sbjct: 26 QSESFHAIHKVPVGDSPYVRAKNVQLVEKDPERAIPLFWKAINAGDRVDSALKDMAIVMK 85
Query: 81 QLDRSEEAIEAICSFRGLCSKQSQESLDNVLIDLYKKCGKIDEQIELLKRKLKLIYEGEA 140
Q +R+EEAIEAI S R CS Q+QESLDN+L+DLYK+CG++D+QI LLK KL LI +G A
Sbjct: 86 QQNRAEEAIEAIKSLRVRCSDQAQESLDNILLDLYKRCGRLDDQIGLLKHKLFLIQKGLA 145
Query: 141 FNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKMNYVMAE 185
FNGK TKTARS GKKFQVS++QE +RLLGNLGWA MQ+ N+V AE
Sbjct: 146 FNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQRDNFVEAE 190
>AT4G20900.1 | Symbols: MS5, TDM1 | Tetratricopeptide repeat
(TPR)-like superfamily protein | chr4:11184103-11185844
REVERSE LENGTH=450
Length = 450
Score = 216 bits (551), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 100/173 (57%), Positives = 137/173 (79%), Gaps = 1/173 (0%)
Query: 14 YNCSKG-KKDDSYHVLHKVPYGDTPYVRAKHAQLVEKDPEGAIALFWRAINTGDKVDSAL 72
Y+CS ++ D +H++HKVP GD+PYVRAKHAQL++KDP AI+LFW AIN GD+VDSAL
Sbjct: 39 YSCSSSSERRDPFHIVHKVPSGDSPYVRAKHAQLIDKDPNRAISLFWTAINAGDRVDSAL 98
Query: 73 KDMAVVMKQLDRSEEAIEAICSFRGLCSKQSQESLDNVLIDLYKKCGKIDEQIELLKRKL 132
KDMAVVMKQL RS+E IEAI SFR LCS +SQ+S+DN+L++LYKK G+I+E+ LL+ KL
Sbjct: 99 KDMAVVMKQLGRSDEGIEAIKSFRYLCSFESQDSIDNLLLELYKKSGRIEEEAVLLEHKL 158
Query: 133 KLIYEGEAFNGKLTKTARSHGKKFQVSIKQETSRLLGNLGWAYMQKMNYVMAE 185
+ + +G F G++++ R GK ++I+QE +R+LGNLGW ++Q NY +AE
Sbjct: 159 QTLEQGMGFGGRVSRAKRVQGKHVIMTIEQEKARILGNLGWVHLQLHNYGIAE 211
>AT5G44330.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:17857325-17859056 FORWARD
LENGTH=469
Length = 469
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 86/156 (55%), Positives = 117/156 (75%)
Query: 30 KVPYGDTPYVRAKHAQLVEKDPEGAIALFWRAINTGDKVDSALKDMAVVMKQLDRSEEAI 89
+V GD+PYVRAKHAQLV KDP AI+LFW AIN GD+VDSALKDM VV+KQL+R +E I
Sbjct: 49 RVRTGDSPYVRAKHAQLVSKDPNRAISLFWAAINAGDRVDSALKDMVVVLKQLNRFDEGI 108
Query: 90 EAICSFRGLCSKQSQESLDNVLIDLYKKCGKIDEQIELLKRKLKLIYEGEAFNGKLTKTA 149
EAI SFR LC +SQ+S+DN+L++LY K G+I E ELL+ KL+ + + + + G++
Sbjct: 109 EAIKSFRYLCPFESQDSIDNLLLELYMKSGRITEVAELLEHKLRTLEQDKHYGGRIKIAK 168
Query: 150 RSHGKKFQVSIKQETSRLLGNLGWAYMQKMNYVMAE 185
RSH ++ +I+QE +R+LGNL W ++Q NY +AE
Sbjct: 169 RSHEEQNNKTIEQEKARILGNLAWVHLQLHNYGIAE 204
>AT5G22794.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: Tetratricopeptide repeat (TPR)-like
superfamily protein (TAIR:AT1G04770.1); Has 146 Blast
hits to 146 proteins in 14 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 146; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:7608242-7611591 FORWARD LENGTH=237
Length = 237
Score = 94.7 bits (234), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/67 (67%), Positives = 59/67 (88%)
Query: 102 QSQESLDNVLIDLYKKCGKIDEQIELLKRKLKLIYEGEAFNGKLTKTARSHGKKFQVSIK 161
Q+QESL+NVLIDLYKK G+ +EQ+ELLK +L +IY+ EAFNGK K ARSHG+KFQV+++
Sbjct: 71 QAQESLENVLIDLYKKGGRTEEQVELLKLQLWMIYQEEAFNGKPAKIARSHGRKFQVTVE 130
Query: 162 QETSRLL 168
+ETSR+L
Sbjct: 131 KETSRML 137
>AT5G22794.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana
protein match is: Tetratricopeptide repeat (TPR)-like
superfamily protein (TAIR:AT1G04770.1); Has 132 Blast
hits to 132 proteins in 14 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr5:7608242-7610818 FORWARD LENGTH=201
Length = 201
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%), Gaps = 7/67 (10%)
Query: 102 QSQESLDNVLIDLYKKCGKIDEQIELLKRKLKLIYEGEAFNGKLTKTARSHGKKFQVSIK 161
Q+QESL+N K G+ +EQ+ELLK +L +IY+ EAFNGK K ARSHG+KFQV+++
Sbjct: 71 QAQESLEN-------KGGRTEEQVELLKLQLWMIYQEEAFNGKPAKIARSHGRKFQVTVE 123
Query: 162 QETSRLL 168
+ETSR+L
Sbjct: 124 KETSRML 130