Miyakogusa Predicted Gene

Lj1g3v3466000.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj1g3v3466000.1 NODE_34396_length_1796_cov_117.677620.path1.1
         (430 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G24760.1 | Symbols:  | Galactose oxidase/kelch repeat superfa...   319   3e-87
AT1G23390.1 | Symbols:  | Kelch repeat-containing F-box family p...    72   5e-13

>AT3G24760.1 | Symbols:  | Galactose oxidase/kelch repeat
           superfamily protein | chr3:9040108-9041259 FORWARD
           LENGTH=383
          Length = 383

 Score =  319 bits (817), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 178/358 (49%), Positives = 217/358 (60%), Gaps = 20/358 (5%)

Query: 73  RASTVCKQWHSLISSSSFFTLHSLQHQHQPWFFIHGIHNISSKNNQSFAFDPSSNSWXXX 132
           R + V KQW SLI+S       S      PW F+ GIHN SS +NQSFAFDP SN+W   
Sbjct: 35  RFTLVSKQWRSLITS--LPPSPSPSPSSPPWLFLFGIHNTSSFHNQSFAFDPLSNTWLRL 92

Query: 133 XXXXXXXXXHQPNXXXXXXXXXXXXXAPNFLYTPILRPHWHAAPPLHYPRINPLLGVFHD 192
                       +             AP F ++PIL+P+W    P+ +PRINPLL VF  
Sbjct: 93  PPS------SSSSDHLVGSNRFLFTTAPRFSFSPILKPNWRFTSPVRFPRINPLLTVFTT 146

Query: 193 DKSRSLQNPKFIVVGGVRFIGNLVDIEDRLDVEIYDPLLGYWELGPPLPQDFRXXXXXXX 252
             + S    K I+VGG   IG LVDIE+RL V+IYDP+L  WEL  PLP DFR       
Sbjct: 147 LSNSS----KLILVGGSSRIGGLVDIEERLAVQIYDPVLDSWELCSPLPADFRSGQDHQT 202

Query: 253 XXXALFKGRFYVFGIYSCFVSSFDLHRRVWSEVRILRPPGVVFSFLIASRETLVLAGVCN 312
              ALFK RFYVF  YSCF+SSF L    WS+V+ L+PPG+ F++L +    LVL G+C 
Sbjct: 203 LTSALFKRRFYVFDNYSCFISSFCLDSYTWSDVQTLKPPGLSFAYLNSCNGMLVLGGMC- 261

Query: 313 SNSPRGSSFKLWRVDERTMEFSEIGVMPHDLLLSLFDG-DEDDRFASLKCVGLGDLVYVF 371
                G SF LW ++E +MEFSEI VMP DLL  L D  DEDD+F SLKC G G+LVYVF
Sbjct: 262 -----GFSFNLWSIEEGSMEFSEIAVMPEDLLFGLVDSDDEDDKFRSLKCAGSGNLVYVF 316

Query: 372 NEDYHKMYPACVCEI-HAESGKCEWRRVPQLPSLMNRFHKVISFSSTVPLHSILGQRE 428
           N+D HK +PACVCEI   E+G C WRRVP LPS +N+FHKV+SF STV +  +    E
Sbjct: 317 NDDCHKKFPACVCEIGGGENGICSWRRVPCLPSPVNKFHKVVSFCSTVSITDVFHPEE 374


>AT1G23390.1 | Symbols:  | Kelch repeat-containing F-box family
           protein | chr1:8309449-8310633 REVERSE LENGTH=394
          Length = 394

 Score = 72.4 bits (176), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 134/349 (38%), Gaps = 40/349 (11%)

Query: 74  ASTVCKQWHSLISSSSFFTLHSLQHQHQPWFFIHGIHNIS--SKNNQSFAFDPSSNSWXX 131
           A  V K W+  +    F++L  L+    PW F++   N    +    + A+DP S +W  
Sbjct: 40  ACQVSKSWNRAV----FYSLRRLKTM--PWLFVYNQRNSPPYTMATMAMAYDPKSEAWIE 93

Query: 132 XXXXXXXXXXHQPNXXXXXXXXXXXXXAPNFLYTPILRPHW-HAAPPLHYPRINPLLGVF 190
                                      A     T      W H APP  + RI+P++ V 
Sbjct: 94  LNTASSPVEHVSVARSSHSTLLYALSPARFSFSTDAFHLTWQHVAPPRVW-RIDPIVAVV 152

Query: 191 HDDKSRSLQNPKFIVVGGVRFIGNLVDIE-DRLDVEIYD--PLLGYWELGPPLPQDFRXX 247
                RSL     I+ GGV       D E DR  VE++D     G WE    +P      
Sbjct: 153 ----GRSL-----IIAGGV------CDFEEDRFAVELFDIESGDGAWERCESMPDFLYES 197

Query: 248 XXXXXXXXALFKGRFYVFGIYSCFVSSFDLHRRVWSEVRILRPPGV-VFSFLIA-SRETL 305
                   A+   + YV    S    SF+   R W+++  L P    ++S  I  S   L
Sbjct: 198 ASSTWLSVAVSSEKMYVTEKRSGVTCSFNPVTRSWTKLLDLCPGECSLYSRSIGFSVNRL 257

Query: 306 VLAGVCNSN-SPRGSSFKLWRV---DERTMEFSEIGVMPHDLLLSLFDGDEDDRFASLKC 361
           ++AG+     +P G   +LW V   DE  ++F  IG MP   L  L   + D    S+  
Sbjct: 258 IMAGIIGDEYNPTG--IELWEVIDSDESHLKFESIGSMPETYLEKLRGINSDWPLTSIVL 315

Query: 362 VGLGDLVYVFNEDYHKMYPACVCEIHAESGK-CEWRRVPQLPSLMNRFH 409
             +GD+VYV     +      +     E GK C+WR +P   +   + H
Sbjct: 316 NAVGDMVYVHGAAENG---GEIVAAEIEGGKLCKWRTLPNADATWKKSH 361